Gene : AT2G39580 A. thaliana TAIR10
Defline:  (1 of 1) PF10650 - Putative zinc-finger domain (zf-C3H1) Genomic Order:  3327
Name:  ? AT2G39580 Secondary Identifier:  ? PAC:19641356
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G39580 0.5kb upstream 0.5kb upstream 7149 true Chr2: 16509925-16517073 Arabidopsis thaliana
AT2G39580 0.5kb upstream 0.5kb upstream 500 false Chr2: 16509925-16510424 Arabidopsis thaliana
AT2G39580 0.5kb downstream 0.5kb downstream 7149 true Chr2: 16510425-16517573 Arabidopsis thaliana
AT2G39580 0.5kb downstream 0.5kb downstream 500 false Chr2: 16517074-16517573 Arabidopsis thaliana
AT2G39580 1.0kb upstream 1.0kb upstream 7649 true Chr2: 16509425-16517073 Arabidopsis thaliana
AT2G39580 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16509425-16510424 Arabidopsis thaliana
AT2G39580 1.0kb downstream 1.0kb downstream 7649 true Chr2: 16510425-16518073 Arabidopsis thaliana
AT2G39580 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16517074-16518073 Arabidopsis thaliana
AT2G39580 2.0kb upstream 2.0kb upstream 8649 true Chr2: 16508425-16517073 Arabidopsis thaliana
AT2G39580 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16508425-16510424 Arabidopsis thaliana
AT2G39580 2.0kb downstream 2.0kb downstream 8649 true Chr2: 16510425-16519073 Arabidopsis thaliana
AT2G39580 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16517074-16519073 Arabidopsis thaliana
AT2G39580 5.0kb upstream 5.0kb upstream 11649 true Chr2: 16505425-16517073 Arabidopsis thaliana
AT2G39580 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16505425-16510424 Arabidopsis thaliana
AT2G39580 5.0kb downstream 5.0kb downstream 11649 true Chr2: 16510425-16522073 Arabidopsis thaliana
AT2G39580 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16517074-16522073 Arabidopsis thaliana
AT2G39580 10.0kb upstream 10.0kb upstream 16649 true Chr2: 16500425-16517073 Arabidopsis thaliana
AT2G39580 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16500425-16510424 Arabidopsis thaliana
AT2G39580 10.0kb downstream 10.0kb downstream 16649 true Chr2: 16510425-16527073 Arabidopsis thaliana
AT2G39580 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16517074-16527073 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378840 5261 Brassicaceae View MSA
123828291 5264 Brassicales-Malvales View MSA
124336853 5266 SBM View MSA
124244000 5268 Malvidae View MSA
124073627 5270 Rosid View MSA
123741061 5271 Pentapetalae View MSA
122787425 5272 Eudicot View MSA
122048240 5273 Angiosperm View MSA
121310901 5274 Embryophyte View MSA
123348277 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.727        
cufflinks 20.954       High
cufflinks 13.429        
cufflinks 18.371        
cufflinks 11.69       Low
cufflinks 16.125        

0 Strain