Gene : SCAR2 A. thaliana TAIR10
Primary Identifier:  ? AT2G38440 Defline:  (1 of 2) PTHR12902:SF12 - PROTEIN SCAR2-RELATED
Genomic Order:  3209 Name:  ? AT2G38440
Secondary Identifier:  ? PAC:19641253
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G38440 0.5kb upstream 0.5kb upstream 6393 true Chr2: 16094829-16101221 Arabidopsis thaliana
AT2G38440 0.5kb upstream 0.5kb upstream 500 false Chr2: 16094829-16095328 Arabidopsis thaliana
AT2G38440 0.5kb downstream 0.5kb downstream 6393 true Chr2: 16095329-16101721 Arabidopsis thaliana
AT2G38440 0.5kb downstream 0.5kb downstream 500 false Chr2: 16101222-16101721 Arabidopsis thaliana
AT2G38440 1.0kb upstream 1.0kb upstream 6893 true Chr2: 16094329-16101221 Arabidopsis thaliana
AT2G38440 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16094329-16095328 Arabidopsis thaliana
AT2G38440 1.0kb downstream 1.0kb downstream 6893 true Chr2: 16095329-16102221 Arabidopsis thaliana
AT2G38440 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16101222-16102221 Arabidopsis thaliana
AT2G38440 2.0kb upstream 2.0kb upstream 7893 true Chr2: 16093329-16101221 Arabidopsis thaliana
AT2G38440 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16093329-16095328 Arabidopsis thaliana
AT2G38440 2.0kb downstream 2.0kb downstream 7893 true Chr2: 16095329-16103221 Arabidopsis thaliana
AT2G38440 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16101222-16103221 Arabidopsis thaliana
AT2G38440 5.0kb upstream 5.0kb upstream 10893 true Chr2: 16090329-16101221 Arabidopsis thaliana
AT2G38440 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16090329-16095328 Arabidopsis thaliana
AT2G38440 5.0kb downstream 5.0kb downstream 10893 true Chr2: 16095329-16106221 Arabidopsis thaliana
AT2G38440 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16101222-16106221 Arabidopsis thaliana
AT2G38440 10.0kb upstream 10.0kb upstream 15893 true Chr2: 16085329-16101221 Arabidopsis thaliana
AT2G38440 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16085329-16095328 Arabidopsis thaliana
AT2G38440 10.0kb downstream 10.0kb downstream 15893 true Chr2: 16095329-16111221 Arabidopsis thaliana
AT2G38440 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16101222-16111221 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364505 5261 Brassicaceae View MSA
123835118 5264 Brassicales-Malvales View MSA
124344641 5266 SBM View MSA
124243921 5268 Malvidae View MSA
124065878 5270 Rosid View MSA
123743804 5271 Pentapetalae View MSA
122797754 5272 Eudicot View MSA
122043443 5273 Angiosperm View MSA
121351143 5274 Embryophyte View MSA
123382024 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.154        
cufflinks 16.856        
cufflinks 13.155       Low
cufflinks 18.225       High
cufflinks 13.843       Low
cufflinks 17.59        

0 Strain