Gene : LP1 A. thaliana TAIR10
Primary Identifier:  ? AT2G38540 Defline:  (1 of 5) PTHR33076//PTHR33076:SF20 - FAMILY NOT NAMED // BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED
Genomic Order:  3219 Name:  ? AT2G38540
Secondary Identifier:  ? PAC:19643272
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Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G38540 0.5kb upstream 0.5kb upstream 1325 true Chr2: 16129850-16131174 Arabidopsis thaliana
AT2G38540 0.5kb upstream 0.5kb upstream 500 false Chr2: 16129850-16130349 Arabidopsis thaliana
AT2G38540 0.5kb downstream 0.5kb downstream 1325 true Chr2: 16130350-16131674 Arabidopsis thaliana
AT2G38540 0.5kb downstream 0.5kb downstream 500 false Chr2: 16131175-16131674 Arabidopsis thaliana
AT2G38540 1.0kb upstream 1.0kb upstream 1825 true Chr2: 16129350-16131174 Arabidopsis thaliana
AT2G38540 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16129350-16130349 Arabidopsis thaliana
AT2G38540 1.0kb downstream 1.0kb downstream 1825 true Chr2: 16130350-16132174 Arabidopsis thaliana
AT2G38540 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16131175-16132174 Arabidopsis thaliana
AT2G38540 2.0kb upstream 2.0kb upstream 2825 true Chr2: 16128350-16131174 Arabidopsis thaliana
AT2G38540 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16128350-16130349 Arabidopsis thaliana
AT2G38540 2.0kb downstream 2.0kb downstream 2825 true Chr2: 16130350-16133174 Arabidopsis thaliana
AT2G38540 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16131175-16133174 Arabidopsis thaliana
AT2G38540 5.0kb upstream 5.0kb upstream 5825 true Chr2: 16125350-16131174 Arabidopsis thaliana
AT2G38540 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16125350-16130349 Arabidopsis thaliana
AT2G38540 5.0kb downstream 5.0kb downstream 5825 true Chr2: 16130350-16136174 Arabidopsis thaliana
AT2G38540 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16131175-16136174 Arabidopsis thaliana
AT2G38540 10.0kb upstream 10.0kb upstream 10825 true Chr2: 16120350-16131174 Arabidopsis thaliana
AT2G38540 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16120350-16130349 Arabidopsis thaliana
AT2G38540 10.0kb downstream 10.0kb downstream 10825 true Chr2: 16130350-16141174 Arabidopsis thaliana
AT2G38540 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16131175-16141174 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381669 5261 Brassicaceae View MSA
123840220 5264 Brassicales-Malvales View MSA
124346813 5266 SBM View MSA
124254589 5268 Malvidae View MSA
124074379 5270 Rosid View MSA
123753232 5271 Pentapetalae View MSA
122797090 5272 Eudicot View MSA
122049972 5273 Angiosperm View MSA
121351248 5274 Embryophyte View MSA
123382075 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 436.84     High  
cufflinks 2.018       Low
cufflinks 342.907     High  
cufflinks 6.467        
cufflinks 391.81     High  
cufflinks 2.021       Low

0 Strain