Gene : AUX1 A. thaliana TAIR10
Primary Identifier:  ? AT2G38120 Defline:  (1 of 2) PTHR22950//PTHR22950:SF256 - AMINO ACID TRANSPORTER // AUXIN TRANSPORTER PROTEIN 1-RELATED
Genomic Order:  3174 Name:  ? AT2G38120
Secondary Identifier:  ? PAC:19639314
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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G38120 0.5kb upstream 0.5kb upstream 4688 true Chr2: 15972493-15977180 Arabidopsis thaliana
AT2G38120 0.5kb upstream 0.5kb upstream 500 false Chr2: 15972493-15972992 Arabidopsis thaliana
AT2G38120 0.5kb downstream 0.5kb downstream 4688 true Chr2: 15972993-15977680 Arabidopsis thaliana
AT2G38120 0.5kb downstream 0.5kb downstream 500 false Chr2: 15977181-15977680 Arabidopsis thaliana
AT2G38120 1.0kb upstream 1.0kb upstream 5188 true Chr2: 15971993-15977180 Arabidopsis thaliana
AT2G38120 1.0kb upstream 1.0kb upstream 1000 false Chr2: 15971993-15972992 Arabidopsis thaliana
AT2G38120 1.0kb downstream 1.0kb downstream 5188 true Chr2: 15972993-15978180 Arabidopsis thaliana
AT2G38120 1.0kb downstream 1.0kb downstream 1000 false Chr2: 15977181-15978180 Arabidopsis thaliana
AT2G38120 2.0kb upstream 2.0kb upstream 6188 true Chr2: 15970993-15977180 Arabidopsis thaliana
AT2G38120 2.0kb upstream 2.0kb upstream 2000 false Chr2: 15970993-15972992 Arabidopsis thaliana
AT2G38120 2.0kb downstream 2.0kb downstream 6188 true Chr2: 15972993-15979180 Arabidopsis thaliana
AT2G38120 2.0kb downstream 2.0kb downstream 2000 false Chr2: 15977181-15979180 Arabidopsis thaliana
AT2G38120 5.0kb upstream 5.0kb upstream 9188 true Chr2: 15967993-15977180 Arabidopsis thaliana
AT2G38120 5.0kb upstream 5.0kb upstream 5000 false Chr2: 15967993-15972992 Arabidopsis thaliana
AT2G38120 5.0kb downstream 5.0kb downstream 9188 true Chr2: 15972993-15982180 Arabidopsis thaliana
AT2G38120 5.0kb downstream 5.0kb downstream 5000 false Chr2: 15977181-15982180 Arabidopsis thaliana
AT2G38120 10.0kb upstream 10.0kb upstream 14188 true Chr2: 15962993-15977180 Arabidopsis thaliana
AT2G38120 10.0kb upstream 10.0kb upstream 10000 false Chr2: 15962993-15972992 Arabidopsis thaliana
AT2G38120 10.0kb downstream 10.0kb downstream 14188 true Chr2: 15972993-15987180 Arabidopsis thaliana
AT2G38120 10.0kb downstream 10.0kb downstream 10000 false Chr2: 15977181-15987180 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374533 5261 Brassicaceae View MSA
123838810 5264 Brassicales-Malvales View MSA
124345069 5266 SBM View MSA
124237626 5268 Malvidae View MSA
124074044 5270 Rosid View MSA
123753033 5271 Pentapetalae View MSA
122796609 5272 Eudicot View MSA
122045744 5273 Angiosperm View MSA
121347395 5274 Embryophyte View MSA
123427582 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.848        
cufflinks 53.418     High  
cufflinks 11.739        
cufflinks 43.43     High  
cufflinks 8.706       Low
cufflinks 62.98     High High

0 Strain