Gene : IRX12 A. thaliana TAIR10
Primary Identifier:  ? AT2G38080 Defline:  (1 of 2) PTHR11709:SF93 - LACCASE-10-RELATED
Genomic Order:  3170 Name:  ? AT2G38080
Secondary Identifier:  ? PAC:19640024
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5466 Arabidopsis thaliana pathologic  

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G38080 0.5kb upstream 0.5kb upstream 3657 true Chr2: 15933960-15937616 Arabidopsis thaliana
AT2G38080 0.5kb upstream 0.5kb upstream 500 false Chr2: 15933960-15934459 Arabidopsis thaliana
AT2G38080 0.5kb downstream 0.5kb downstream 3657 true Chr2: 15934460-15938116 Arabidopsis thaliana
AT2G38080 0.5kb downstream 0.5kb downstream 500 false Chr2: 15937617-15938116 Arabidopsis thaliana
AT2G38080 1.0kb upstream 1.0kb upstream 4157 true Chr2: 15933460-15937616 Arabidopsis thaliana
AT2G38080 1.0kb upstream 1.0kb upstream 1000 false Chr2: 15933460-15934459 Arabidopsis thaliana
AT2G38080 1.0kb downstream 1.0kb downstream 4157 true Chr2: 15934460-15938616 Arabidopsis thaliana
AT2G38080 1.0kb downstream 1.0kb downstream 1000 false Chr2: 15937617-15938616 Arabidopsis thaliana
AT2G38080 2.0kb upstream 2.0kb upstream 5157 true Chr2: 15932460-15937616 Arabidopsis thaliana
AT2G38080 2.0kb upstream 2.0kb upstream 2000 false Chr2: 15932460-15934459 Arabidopsis thaliana
AT2G38080 2.0kb downstream 2.0kb downstream 5157 true Chr2: 15934460-15939616 Arabidopsis thaliana
AT2G38080 2.0kb downstream 2.0kb downstream 2000 false Chr2: 15937617-15939616 Arabidopsis thaliana
AT2G38080 5.0kb upstream 5.0kb upstream 8157 true Chr2: 15929460-15937616 Arabidopsis thaliana
AT2G38080 5.0kb upstream 5.0kb upstream 5000 false Chr2: 15929460-15934459 Arabidopsis thaliana
AT2G38080 5.0kb downstream 5.0kb downstream 8157 true Chr2: 15934460-15942616 Arabidopsis thaliana
AT2G38080 5.0kb downstream 5.0kb downstream 5000 false Chr2: 15937617-15942616 Arabidopsis thaliana
AT2G38080 10.0kb upstream 10.0kb upstream 13157 true Chr2: 15924460-15937616 Arabidopsis thaliana
AT2G38080 10.0kb upstream 10.0kb upstream 10000 false Chr2: 15924460-15934459 Arabidopsis thaliana
AT2G38080 10.0kb downstream 10.0kb downstream 13157 true Chr2: 15934460-15947616 Arabidopsis thaliana
AT2G38080 10.0kb downstream 10.0kb downstream 10000 false Chr2: 15937617-15947616 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373955 5261 Brassicaceae View MSA
123833557 5264 Brassicales-Malvales View MSA
124351292 5266 SBM View MSA
124253766 5268 Malvidae View MSA
124069794 5270 Rosid View MSA
123752484 5271 Pentapetalae View MSA
122797198 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.349        
cufflinks 10.567        
cufflinks 3.215        
cufflinks 18.077        
cufflinks 2.579       Low
cufflinks 26.252       High

0 Strain