Gene : PAL1 A. thaliana TAIR10
Primary Identifier:  ? AT2G37040 Defline:  (1 of 4) 4.3.1.24 - Phenylalanine ammonia-lyase
Genomic Order:  3063 Name:  ? AT2G37040
Secondary Identifier:  ? PAC:19641262
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1121 Arabidopsis thaliana pathologic  
Athaliana PWY1F-467 Arabidopsis thaliana pathologic  
Athaliana PWY-7186 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G37040 0.5kb upstream 0.5kb upstream 3488 true Chr2: 15557376-15560863 Arabidopsis thaliana
AT2G37040 0.5kb upstream 0.5kb upstream 500 false Chr2: 15560364-15560863 Arabidopsis thaliana
AT2G37040 0.5kb downstream 0.5kb downstream 3488 true Chr2: 15556876-15560363 Arabidopsis thaliana
AT2G37040 0.5kb downstream 0.5kb downstream 500 false Chr2: 15556876-15557375 Arabidopsis thaliana
AT2G37040 1.0kb upstream 1.0kb upstream 3988 true Chr2: 15557376-15561363 Arabidopsis thaliana
AT2G37040 1.0kb upstream 1.0kb upstream 1000 false Chr2: 15560364-15561363 Arabidopsis thaliana
AT2G37040 1.0kb downstream 1.0kb downstream 3988 true Chr2: 15556376-15560363 Arabidopsis thaliana
AT2G37040 1.0kb downstream 1.0kb downstream 1000 false Chr2: 15556376-15557375 Arabidopsis thaliana
AT2G37040 2.0kb upstream 2.0kb upstream 4988 true Chr2: 15557376-15562363 Arabidopsis thaliana
AT2G37040 2.0kb upstream 2.0kb upstream 2000 false Chr2: 15560364-15562363 Arabidopsis thaliana
AT2G37040 2.0kb downstream 2.0kb downstream 4988 true Chr2: 15555376-15560363 Arabidopsis thaliana
AT2G37040 2.0kb downstream 2.0kb downstream 2000 false Chr2: 15555376-15557375 Arabidopsis thaliana
AT2G37040 5.0kb upstream 5.0kb upstream 7988 true Chr2: 15557376-15565363 Arabidopsis thaliana
AT2G37040 5.0kb upstream 5.0kb upstream 5000 false Chr2: 15560364-15565363 Arabidopsis thaliana
AT2G37040 5.0kb downstream 5.0kb downstream 7988 true Chr2: 15552376-15560363 Arabidopsis thaliana
AT2G37040 5.0kb downstream 5.0kb downstream 5000 false Chr2: 15552376-15557375 Arabidopsis thaliana
AT2G37040 10.0kb upstream 10.0kb upstream 12988 true Chr2: 15557376-15570363 Arabidopsis thaliana
AT2G37040 10.0kb upstream 10.0kb upstream 10000 false Chr2: 15560364-15570363 Arabidopsis thaliana
AT2G37040 10.0kb downstream 10.0kb downstream 12988 true Chr2: 15547376-15560363 Arabidopsis thaliana
AT2G37040 10.0kb downstream 10.0kb downstream 10000 false Chr2: 15547376-15557375 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372913 5261 Brassicaceae View MSA
123839790 5264 Brassicales-Malvales View MSA
124346801 5266 SBM View MSA
124254509 5268 Malvidae View MSA
124070450 5270 Rosid View MSA
123747775 5271 Pentapetalae View MSA
122795347 5272 Eudicot View MSA
122043246 5273 Angiosperm View MSA
121351477 5274 Embryophyte View MSA
123382181 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.769        
cufflinks 119.726     High  
cufflinks 12.291       Low
cufflinks 192.959     High High
cufflinks 14.732        
cufflinks 167.658     High  

0 Strain