Gene : AT2G27580 A. thaliana TAIR10
Defline:  (1 of 10) PTHR10634 - AN1-TYPE ZINC FINGER PROTEIN Genomic Order:  2046
Name:  ? AT2G27580 Secondary Identifier:  ? PAC:19641048
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27580 0.5kb upstream 0.5kb upstream 1619 true Chr2: 11776411-11778029 Arabidopsis thaliana
AT2G27580 0.5kb upstream 0.5kb upstream 500 false Chr2: 11777530-11778029 Arabidopsis thaliana
AT2G27580 0.5kb downstream 0.5kb downstream 1619 true Chr2: 11775911-11777529 Arabidopsis thaliana
AT2G27580 0.5kb downstream 0.5kb downstream 500 false Chr2: 11775911-11776410 Arabidopsis thaliana
AT2G27580 1.0kb upstream 1.0kb upstream 2119 true Chr2: 11776411-11778529 Arabidopsis thaliana
AT2G27580 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11777530-11778529 Arabidopsis thaliana
AT2G27580 1.0kb downstream 1.0kb downstream 2119 true Chr2: 11775411-11777529 Arabidopsis thaliana
AT2G27580 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11775411-11776410 Arabidopsis thaliana
AT2G27580 2.0kb upstream 2.0kb upstream 3119 true Chr2: 11776411-11779529 Arabidopsis thaliana
AT2G27580 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11777530-11779529 Arabidopsis thaliana
AT2G27580 2.0kb downstream 2.0kb downstream 3119 true Chr2: 11774411-11777529 Arabidopsis thaliana
AT2G27580 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11774411-11776410 Arabidopsis thaliana
AT2G27580 5.0kb upstream 5.0kb upstream 6119 true Chr2: 11776411-11782529 Arabidopsis thaliana
AT2G27580 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11777530-11782529 Arabidopsis thaliana
AT2G27580 5.0kb downstream 5.0kb downstream 6119 true Chr2: 11771411-11777529 Arabidopsis thaliana
AT2G27580 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11771411-11776410 Arabidopsis thaliana
AT2G27580 10.0kb upstream 10.0kb upstream 11119 true Chr2: 11776411-11787529 Arabidopsis thaliana
AT2G27580 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11777530-11787529 Arabidopsis thaliana
AT2G27580 10.0kb downstream 10.0kb downstream 11119 true Chr2: 11766411-11777529 Arabidopsis thaliana
AT2G27580 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11766411-11776410 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363404 5261 Brassicaceae View MSA
123833350 5264 Brassicales-Malvales View MSA
124345676 5266 SBM View MSA
124251529 5268 Malvidae View MSA
124064566 5270 Rosid View MSA
123746917 5271 Pentapetalae View MSA
122796829 5272 Eudicot View MSA
122050732 5273 Angiosperm View MSA
121349866 5274 Embryophyte View MSA
123428230 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.777        
cufflinks 10.719        
cufflinks 6.353       Low
cufflinks 12.179        
cufflinks 7.634        
cufflinks 13.476       High

0 Strain