Gene : AT2G26620 A. thaliana TAIR10
Defline:  (1 of 16) 3.2.1.15//3.2.1.67 - Polygalacturonase / Pectinase // Galacturan 1,4-alpha-galacturonidase / Poly(galacturonate) hydrolase Genomic Order:  1940
Name:  ? AT2G26620 Secondary Identifier:  ? PAC:19640639
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G26620 0.5kb upstream 0.5kb upstream 2173 true Chr2: 11325163-11327335 Arabidopsis thaliana
AT2G26620 0.5kb upstream 0.5kb upstream 500 false Chr2: 11326836-11327335 Arabidopsis thaliana
AT2G26620 0.5kb downstream 0.5kb downstream 2173 true Chr2: 11324663-11326835 Arabidopsis thaliana
AT2G26620 0.5kb downstream 0.5kb downstream 500 false Chr2: 11324663-11325162 Arabidopsis thaliana
AT2G26620 1.0kb upstream 1.0kb upstream 2673 true Chr2: 11325163-11327835 Arabidopsis thaliana
AT2G26620 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11326836-11327835 Arabidopsis thaliana
AT2G26620 1.0kb downstream 1.0kb downstream 2673 true Chr2: 11324163-11326835 Arabidopsis thaliana
AT2G26620 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11324163-11325162 Arabidopsis thaliana
AT2G26620 2.0kb upstream 2.0kb upstream 3673 true Chr2: 11325163-11328835 Arabidopsis thaliana
AT2G26620 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11326836-11328835 Arabidopsis thaliana
AT2G26620 2.0kb downstream 2.0kb downstream 3673 true Chr2: 11323163-11326835 Arabidopsis thaliana
AT2G26620 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11323163-11325162 Arabidopsis thaliana
AT2G26620 5.0kb upstream 5.0kb upstream 6673 true Chr2: 11325163-11331835 Arabidopsis thaliana
AT2G26620 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11326836-11331835 Arabidopsis thaliana
AT2G26620 5.0kb downstream 5.0kb downstream 6673 true Chr2: 11320163-11326835 Arabidopsis thaliana
AT2G26620 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11320163-11325162 Arabidopsis thaliana
AT2G26620 10.0kb upstream 10.0kb upstream 11673 true Chr2: 11325163-11336835 Arabidopsis thaliana
AT2G26620 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11326836-11336835 Arabidopsis thaliana
AT2G26620 10.0kb downstream 10.0kb downstream 11673 true Chr2: 11315163-11326835 Arabidopsis thaliana
AT2G26620 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11315163-11325162 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329361 5261 Brassicaceae Singleton cluster - no MSA
123770671 5264 Brassicales-Malvales Singleton cluster - no MSA
124269209 5266 SBM Singleton cluster - no MSA
124125363 5268 Malvidae Singleton cluster - no MSA
123854339 5270 Rosid Singleton cluster - no MSA
123440365 5271 Pentapetalae Singleton cluster - no MSA
122475954 5272 Eudicot Singleton cluster - no MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.099     Low High
cufflinks 0.037     Low  
cufflinks 0.069     Low  
cufflinks 0.01     Low Low
cufflinks 0.039     Low  

0 Strain