Gene : AT2G27370 A. thaliana TAIR10
Defline:  (1 of 3) PTHR11615:SF116 - CASPARIAN STRIP MEMBRANE PROTEIN 1-RELATED Genomic Order:  2023
Name:  ? AT2G27370 Secondary Identifier:  ? PAC:19639732
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27370 0.5kb upstream 0.5kb upstream 2055 true Chr2: 11708450-11710504 Arabidopsis thaliana
AT2G27370 0.5kb upstream 0.5kb upstream 500 false Chr2: 11710005-11710504 Arabidopsis thaliana
AT2G27370 0.5kb downstream 0.5kb downstream 2055 true Chr2: 11707950-11710004 Arabidopsis thaliana
AT2G27370 0.5kb downstream 0.5kb downstream 500 false Chr2: 11707950-11708449 Arabidopsis thaliana
AT2G27370 1.0kb upstream 1.0kb upstream 2555 true Chr2: 11708450-11711004 Arabidopsis thaliana
AT2G27370 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11710005-11711004 Arabidopsis thaliana
AT2G27370 1.0kb downstream 1.0kb downstream 2555 true Chr2: 11707450-11710004 Arabidopsis thaliana
AT2G27370 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11707450-11708449 Arabidopsis thaliana
AT2G27370 2.0kb upstream 2.0kb upstream 3555 true Chr2: 11708450-11712004 Arabidopsis thaliana
AT2G27370 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11710005-11712004 Arabidopsis thaliana
AT2G27370 2.0kb downstream 2.0kb downstream 3555 true Chr2: 11706450-11710004 Arabidopsis thaliana
AT2G27370 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11706450-11708449 Arabidopsis thaliana
AT2G27370 5.0kb upstream 5.0kb upstream 6555 true Chr2: 11708450-11715004 Arabidopsis thaliana
AT2G27370 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11710005-11715004 Arabidopsis thaliana
AT2G27370 5.0kb downstream 5.0kb downstream 6555 true Chr2: 11703450-11710004 Arabidopsis thaliana
AT2G27370 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11703450-11708449 Arabidopsis thaliana
AT2G27370 10.0kb upstream 10.0kb upstream 11555 true Chr2: 11708450-11720004 Arabidopsis thaliana
AT2G27370 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11710005-11720004 Arabidopsis thaliana
AT2G27370 10.0kb downstream 10.0kb downstream 11555 true Chr2: 11698450-11710004 Arabidopsis thaliana
AT2G27370 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11698450-11708449 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366827 5261 Brassicaceae View MSA
123837381 5264 Brassicales-Malvales View MSA
124343898 5266 SBM View MSA
124240358 5268 Malvidae View MSA
124067511 5270 Rosid View MSA
123750360 5271 Pentapetalae View MSA
122793226 5272 Eudicot View MSA
122046070 5273 Angiosperm View MSA
121351638 5274 Embryophyte View MSA
123382256 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.622        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.18        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.466       High

0 Strain