Gene : ALPHA-VPE A. thaliana TAIR10
Primary Identifier:  ? AT2G25940 Defline:  (1 of 4) K01369 - legumain (LGMN)
Genomic Order:  1871 Name:  ? AT2G25940
Secondary Identifier:  ? PAC:19638881
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G25940 0.5kb upstream 0.5kb upstream 3228 true Chr2: 11063301-11066528 Arabidopsis thaliana
AT2G25940 0.5kb upstream 0.5kb upstream 500 false Chr2: 11066029-11066528 Arabidopsis thaliana
AT2G25940 0.5kb downstream 0.5kb downstream 3228 true Chr2: 11062801-11066028 Arabidopsis thaliana
AT2G25940 0.5kb downstream 0.5kb downstream 500 false Chr2: 11062801-11063300 Arabidopsis thaliana
AT2G25940 1.0kb upstream 1.0kb upstream 3728 true Chr2: 11063301-11067028 Arabidopsis thaliana
AT2G25940 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11066029-11067028 Arabidopsis thaliana
AT2G25940 1.0kb downstream 1.0kb downstream 3728 true Chr2: 11062301-11066028 Arabidopsis thaliana
AT2G25940 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11062301-11063300 Arabidopsis thaliana
AT2G25940 2.0kb upstream 2.0kb upstream 4728 true Chr2: 11063301-11068028 Arabidopsis thaliana
AT2G25940 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11066029-11068028 Arabidopsis thaliana
AT2G25940 2.0kb downstream 2.0kb downstream 4728 true Chr2: 11061301-11066028 Arabidopsis thaliana
AT2G25940 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11061301-11063300 Arabidopsis thaliana
AT2G25940 5.0kb upstream 5.0kb upstream 7728 true Chr2: 11063301-11071028 Arabidopsis thaliana
AT2G25940 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11066029-11071028 Arabidopsis thaliana
AT2G25940 5.0kb downstream 5.0kb downstream 7728 true Chr2: 11058301-11066028 Arabidopsis thaliana
AT2G25940 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11058301-11063300 Arabidopsis thaliana
AT2G25940 10.0kb upstream 10.0kb upstream 12728 true Chr2: 11063301-11076028 Arabidopsis thaliana
AT2G25940 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11066029-11076028 Arabidopsis thaliana
AT2G25940 10.0kb downstream 10.0kb downstream 12728 true Chr2: 11053301-11066028 Arabidopsis thaliana
AT2G25940 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11053301-11063300 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366024 5261 Brassicaceae View MSA
123799089 5264 Brassicales-Malvales View MSA
124296645 5266 SBM View MSA
124249924 5268 Malvidae View MSA
124069036 5270 Rosid View MSA
123743278 5271 Pentapetalae View MSA
122791730 5272 Eudicot View MSA
122046408 5273 Angiosperm View MSA
121350664 5274 Embryophyte View MSA
123428632 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.26     Low  
cufflinks 1.649        
cufflinks 0.16     Low Low
cufflinks 2.469        
cufflinks 0.228     Low  
cufflinks 2.736       High

0 Strain