Gene : RHC2A A. thaliana TAIR10
Primary Identifier:  ? AT2G39720 Defline:  (1 of 2) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8
Genomic Order:  3339 Name:  ? AT2G39720
Secondary Identifier:  ? PAC:19639386
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G39720 0.5kb upstream 0.5kb upstream 2114 true Chr2: 16567209-16569322 Arabidopsis thaliana
AT2G39720 0.5kb upstream 0.5kb upstream 500 false Chr2: 16568823-16569322 Arabidopsis thaliana
AT2G39720 0.5kb downstream 0.5kb downstream 2114 true Chr2: 16566709-16568822 Arabidopsis thaliana
AT2G39720 0.5kb downstream 0.5kb downstream 500 false Chr2: 16566709-16567208 Arabidopsis thaliana
AT2G39720 1.0kb upstream 1.0kb upstream 2614 true Chr2: 16567209-16569822 Arabidopsis thaliana
AT2G39720 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16568823-16569822 Arabidopsis thaliana
AT2G39720 1.0kb downstream 1.0kb downstream 2614 true Chr2: 16566209-16568822 Arabidopsis thaliana
AT2G39720 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16566209-16567208 Arabidopsis thaliana
AT2G39720 2.0kb upstream 2.0kb upstream 3614 true Chr2: 16567209-16570822 Arabidopsis thaliana
AT2G39720 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16568823-16570822 Arabidopsis thaliana
AT2G39720 2.0kb downstream 2.0kb downstream 3614 true Chr2: 16565209-16568822 Arabidopsis thaliana
AT2G39720 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16565209-16567208 Arabidopsis thaliana
AT2G39720 5.0kb upstream 5.0kb upstream 6614 true Chr2: 16567209-16573822 Arabidopsis thaliana
AT2G39720 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16568823-16573822 Arabidopsis thaliana
AT2G39720 5.0kb downstream 5.0kb downstream 6614 true Chr2: 16562209-16568822 Arabidopsis thaliana
AT2G39720 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16562209-16567208 Arabidopsis thaliana
AT2G39720 10.0kb upstream 10.0kb upstream 11614 true Chr2: 16567209-16578822 Arabidopsis thaliana
AT2G39720 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16568823-16578822 Arabidopsis thaliana
AT2G39720 10.0kb downstream 10.0kb downstream 11614 true Chr2: 16557209-16568822 Arabidopsis thaliana
AT2G39720 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16557209-16567208 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363386 5261 Brassicaceae View MSA
123838117 5264 Brassicales-Malvales View MSA
124341456 5266 SBM View MSA
124249586 5268 Malvidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.85        
cufflinks 26.881        
cufflinks 24.865       Low
cufflinks 27.673        
cufflinks 26.988     High  
cufflinks 29.374     High High

0 Strain