Gene : AT2G39670 A. thaliana TAIR10
Defline:  (1 of 1) K06941 - 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] (rlmN) Genomic Order:  3334
Name:  ? AT2G39670 Secondary Identifier:  ? PAC:19640541
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G39670 0.5kb upstream 0.5kb upstream 3589 true Chr2: 16533730-16537318 Arabidopsis thaliana
AT2G39670 0.5kb upstream 0.5kb upstream 500 false Chr2: 16533730-16534229 Arabidopsis thaliana
AT2G39670 0.5kb downstream 0.5kb downstream 3589 true Chr2: 16534230-16537818 Arabidopsis thaliana
AT2G39670 0.5kb downstream 0.5kb downstream 500 false Chr2: 16537319-16537818 Arabidopsis thaliana
AT2G39670 1.0kb upstream 1.0kb upstream 4089 true Chr2: 16533230-16537318 Arabidopsis thaliana
AT2G39670 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16533230-16534229 Arabidopsis thaliana
AT2G39670 1.0kb downstream 1.0kb downstream 4089 true Chr2: 16534230-16538318 Arabidopsis thaliana
AT2G39670 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16537319-16538318 Arabidopsis thaliana
AT2G39670 2.0kb upstream 2.0kb upstream 5089 true Chr2: 16532230-16537318 Arabidopsis thaliana
AT2G39670 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16532230-16534229 Arabidopsis thaliana
AT2G39670 2.0kb downstream 2.0kb downstream 5089 true Chr2: 16534230-16539318 Arabidopsis thaliana
AT2G39670 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16537319-16539318 Arabidopsis thaliana
AT2G39670 5.0kb upstream 5.0kb upstream 8089 true Chr2: 16529230-16537318 Arabidopsis thaliana
AT2G39670 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16529230-16534229 Arabidopsis thaliana
AT2G39670 5.0kb downstream 5.0kb downstream 8089 true Chr2: 16534230-16542318 Arabidopsis thaliana
AT2G39670 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16537319-16542318 Arabidopsis thaliana
AT2G39670 10.0kb upstream 10.0kb upstream 13089 true Chr2: 16524230-16537318 Arabidopsis thaliana
AT2G39670 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16524230-16534229 Arabidopsis thaliana
AT2G39670 10.0kb downstream 10.0kb downstream 13089 true Chr2: 16534230-16547318 Arabidopsis thaliana
AT2G39670 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16537319-16547318 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363531 5261 Brassicaceae View MSA
123834646 5264 Brassicales-Malvales View MSA
124345318 5266 SBM View MSA
124238180 5268 Malvidae View MSA
124061509 5270 Rosid View MSA
123743961 5271 Pentapetalae View MSA
122788034 5272 Eudicot View MSA
122048523 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121344688 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.02        
cufflinks 3.178        
cufflinks 13.434       High
cufflinks 3.282        
cufflinks 11.007        
cufflinks 3.167        

0 Strain