Gene : AT2G39420 A. thaliana TAIR10
Defline:  (1 of 5) PTHR11614:SF92 - ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN-RELATED Genomic Order:  3308
Name:  ? AT2G39420 Secondary Identifier:  ? PAC:19641291
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7420 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G39420 0.5kb upstream 0.5kb upstream 3198 true Chr2: 16459864-16463061 Arabidopsis thaliana
AT2G39420 0.5kb upstream 0.5kb upstream 500 false Chr2: 16459864-16460363 Arabidopsis thaliana
AT2G39420 0.5kb downstream 0.5kb downstream 3198 true Chr2: 16460364-16463561 Arabidopsis thaliana
AT2G39420 0.5kb downstream 0.5kb downstream 500 false Chr2: 16463062-16463561 Arabidopsis thaliana
AT2G39420 1.0kb upstream 1.0kb upstream 3698 true Chr2: 16459364-16463061 Arabidopsis thaliana
AT2G39420 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16459364-16460363 Arabidopsis thaliana
AT2G39420 1.0kb downstream 1.0kb downstream 3698 true Chr2: 16460364-16464061 Arabidopsis thaliana
AT2G39420 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16463062-16464061 Arabidopsis thaliana
AT2G39420 2.0kb upstream 2.0kb upstream 4698 true Chr2: 16458364-16463061 Arabidopsis thaliana
AT2G39420 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16458364-16460363 Arabidopsis thaliana
AT2G39420 2.0kb downstream 2.0kb downstream 4698 true Chr2: 16460364-16465061 Arabidopsis thaliana
AT2G39420 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16463062-16465061 Arabidopsis thaliana
AT2G39420 5.0kb upstream 5.0kb upstream 7698 true Chr2: 16455364-16463061 Arabidopsis thaliana
AT2G39420 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16455364-16460363 Arabidopsis thaliana
AT2G39420 5.0kb downstream 5.0kb downstream 7698 true Chr2: 16460364-16468061 Arabidopsis thaliana
AT2G39420 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16463062-16468061 Arabidopsis thaliana
AT2G39420 10.0kb upstream 10.0kb upstream 12698 true Chr2: 16450364-16463061 Arabidopsis thaliana
AT2G39420 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16450364-16460363 Arabidopsis thaliana
AT2G39420 10.0kb downstream 10.0kb downstream 12698 true Chr2: 16460364-16473061 Arabidopsis thaliana
AT2G39420 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16463062-16473061 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362087 5261 Brassicaceae View MSA
123834296 5264 Brassicales-Malvales View MSA
124350736 5266 SBM View MSA
124253573 5268 Malvidae View MSA
124061404 5270 Rosid View MSA
123753493 5271 Pentapetalae View MSA
122796454 5272 Eudicot View MSA
122051494 5273 Angiosperm View MSA
121350082 5274 Embryophyte View MSA
123428617 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.766     High Low
cufflinks 51.037     High  
cufflinks 45.732     High  
cufflinks 51.75     High  
cufflinks 45.624     High  
cufflinks 55.212     High  

0 Strain