Gene : LBD15 A. thaliana TAIR10
Primary Identifier:  ? AT2G40470 Defline:  (1 of 1) PTHR31301//PTHR31301:SF2 - FAMILY NOT NAMED // LOB DOMAIN-CONTAINING PROTEIN 15
Genomic Order:  3430 Name:  ? AT2G40470
Secondary Identifier:  ? PAC:19642464
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G40470 0.5kb upstream 0.5kb upstream 1849 true Chr2: 16902304-16904152 Arabidopsis thaliana
AT2G40470 0.5kb upstream 0.5kb upstream 500 false Chr2: 16903653-16904152 Arabidopsis thaliana
AT2G40470 0.5kb downstream 0.5kb downstream 1849 true Chr2: 16901804-16903652 Arabidopsis thaliana
AT2G40470 0.5kb downstream 0.5kb downstream 500 false Chr2: 16901804-16902303 Arabidopsis thaliana
AT2G40470 1.0kb upstream 1.0kb upstream 2349 true Chr2: 16902304-16904652 Arabidopsis thaliana
AT2G40470 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16903653-16904652 Arabidopsis thaliana
AT2G40470 1.0kb downstream 1.0kb downstream 2349 true Chr2: 16901304-16903652 Arabidopsis thaliana
AT2G40470 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16901304-16902303 Arabidopsis thaliana
AT2G40470 2.0kb upstream 2.0kb upstream 3349 true Chr2: 16902304-16905652 Arabidopsis thaliana
AT2G40470 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16903653-16905652 Arabidopsis thaliana
AT2G40470 2.0kb downstream 2.0kb downstream 3349 true Chr2: 16900304-16903652 Arabidopsis thaliana
AT2G40470 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16900304-16902303 Arabidopsis thaliana
AT2G40470 5.0kb upstream 5.0kb upstream 6349 true Chr2: 16902304-16908652 Arabidopsis thaliana
AT2G40470 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16903653-16908652 Arabidopsis thaliana
AT2G40470 5.0kb downstream 5.0kb downstream 6349 true Chr2: 16897304-16903652 Arabidopsis thaliana
AT2G40470 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16897304-16902303 Arabidopsis thaliana
AT2G40470 10.0kb upstream 10.0kb upstream 11349 true Chr2: 16902304-16913652 Arabidopsis thaliana
AT2G40470 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16903653-16913652 Arabidopsis thaliana
AT2G40470 10.0kb downstream 10.0kb downstream 11349 true Chr2: 16892304-16903652 Arabidopsis thaliana
AT2G40470 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16892304-16902303 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376227 5261 Brassicaceae View MSA
123831721 5264 Brassicales-Malvales View MSA
124337177 5266 SBM View MSA
124254106 5268 Malvidae View MSA
124067191 5270 Rosid View MSA
123746231 5271 Pentapetalae View MSA
122789083 5272 Eudicot View MSA
122043702 5273 Angiosperm View MSA
121351035 5274 Embryophyte View MSA
123381985 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.174     Low  
cufflinks 1.222        
cufflinks 0.072     Low Low
cufflinks 2.333       High
cufflinks 0.173     Low  
cufflinks 1.975        

0 Strain