Gene : AT2G38100 A. thaliana TAIR10
Defline:  (1 of 3) PTHR11654:SF79 - PROTEIN NRT1/ PTR FAMILY 5.5-RELATED Genomic Order:  3172
Name:  ? AT2G38100 Secondary Identifier:  ? PAC:19638723
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G38100 0.5kb upstream 0.5kb upstream 2245 true Chr2: 15948484-15950728 Arabidopsis thaliana
AT2G38100 0.5kb upstream 0.5kb upstream 500 false Chr2: 15950229-15950728 Arabidopsis thaliana
AT2G38100 0.5kb downstream 0.5kb downstream 2245 true Chr2: 15947984-15950228 Arabidopsis thaliana
AT2G38100 0.5kb downstream 0.5kb downstream 500 false Chr2: 15947984-15948483 Arabidopsis thaliana
AT2G38100 1.0kb upstream 1.0kb upstream 2745 true Chr2: 15948484-15951228 Arabidopsis thaliana
AT2G38100 1.0kb upstream 1.0kb upstream 1000 false Chr2: 15950229-15951228 Arabidopsis thaliana
AT2G38100 1.0kb downstream 1.0kb downstream 2745 true Chr2: 15947484-15950228 Arabidopsis thaliana
AT2G38100 1.0kb downstream 1.0kb downstream 1000 false Chr2: 15947484-15948483 Arabidopsis thaliana
AT2G38100 2.0kb upstream 2.0kb upstream 3745 true Chr2: 15948484-15952228 Arabidopsis thaliana
AT2G38100 2.0kb upstream 2.0kb upstream 2000 false Chr2: 15950229-15952228 Arabidopsis thaliana
AT2G38100 2.0kb downstream 2.0kb downstream 3745 true Chr2: 15946484-15950228 Arabidopsis thaliana
AT2G38100 2.0kb downstream 2.0kb downstream 2000 false Chr2: 15946484-15948483 Arabidopsis thaliana
AT2G38100 5.0kb upstream 5.0kb upstream 6745 true Chr2: 15948484-15955228 Arabidopsis thaliana
AT2G38100 5.0kb upstream 5.0kb upstream 5000 false Chr2: 15950229-15955228 Arabidopsis thaliana
AT2G38100 5.0kb downstream 5.0kb downstream 6745 true Chr2: 15943484-15950228 Arabidopsis thaliana
AT2G38100 5.0kb downstream 5.0kb downstream 5000 false Chr2: 15943484-15948483 Arabidopsis thaliana
AT2G38100 10.0kb upstream 10.0kb upstream 11745 true Chr2: 15948484-15960228 Arabidopsis thaliana
AT2G38100 10.0kb upstream 10.0kb upstream 10000 false Chr2: 15950229-15960228 Arabidopsis thaliana
AT2G38100 10.0kb downstream 10.0kb downstream 11745 true Chr2: 15938484-15950228 Arabidopsis thaliana
AT2G38100 10.0kb downstream 10.0kb downstream 10000 false Chr2: 15938484-15948483 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370487 5261 Brassicaceae View MSA
123799974 5264 Brassicales-Malvales View MSA
124338475 5266 SBM View MSA
124180889 5268 Malvidae View MSA
124074847 5270 Rosid View MSA
123752034 5271 Pentapetalae View MSA
122791264 5272 Eudicot View MSA
122045337 5273 Angiosperm View MSA
121350655 5274 Embryophyte View MSA
123428779 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.025     Low Low
cufflinks 0.034     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.098     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.056     Low  

0 Strain