Gene : AT2G38580 A. thaliana TAIR10
Defline:  Mitochondrial ATP synthase D chain-related protein Genomic Order:  3224
Name:  ? AT2G38580 Secondary Identifier:  ? PAC:19642634
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G38580 0.5kb upstream 0.5kb upstream 4519 true Chr2: 16138070-16142588 Arabidopsis thaliana
AT2G38580 0.5kb upstream 0.5kb upstream 500 false Chr2: 16138070-16138569 Arabidopsis thaliana
AT2G38580 0.5kb downstream 0.5kb downstream 4519 true Chr2: 16138570-16143088 Arabidopsis thaliana
AT2G38580 0.5kb downstream 0.5kb downstream 500 false Chr2: 16142589-16143088 Arabidopsis thaliana
AT2G38580 1.0kb upstream 1.0kb upstream 5019 true Chr2: 16137570-16142588 Arabidopsis thaliana
AT2G38580 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16137570-16138569 Arabidopsis thaliana
AT2G38580 1.0kb downstream 1.0kb downstream 5019 true Chr2: 16138570-16143588 Arabidopsis thaliana
AT2G38580 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16142589-16143588 Arabidopsis thaliana
AT2G38580 2.0kb upstream 2.0kb upstream 6019 true Chr2: 16136570-16142588 Arabidopsis thaliana
AT2G38580 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16136570-16138569 Arabidopsis thaliana
AT2G38580 2.0kb downstream 2.0kb downstream 6019 true Chr2: 16138570-16144588 Arabidopsis thaliana
AT2G38580 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16142589-16144588 Arabidopsis thaliana
AT2G38580 5.0kb upstream 5.0kb upstream 9019 true Chr2: 16133570-16142588 Arabidopsis thaliana
AT2G38580 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16133570-16138569 Arabidopsis thaliana
AT2G38580 5.0kb downstream 5.0kb downstream 9019 true Chr2: 16138570-16147588 Arabidopsis thaliana
AT2G38580 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16142589-16147588 Arabidopsis thaliana
AT2G38580 10.0kb upstream 10.0kb upstream 14019 true Chr2: 16128570-16142588 Arabidopsis thaliana
AT2G38580 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16128570-16138569 Arabidopsis thaliana
AT2G38580 10.0kb downstream 10.0kb downstream 14019 true Chr2: 16138570-16152588 Arabidopsis thaliana
AT2G38580 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16142589-16152588 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362149 5261 Brassicaceae View MSA
123828905 5264 Brassicales-Malvales View MSA
124344967 5266 SBM View MSA
124242290 5268 Malvidae View MSA
124069018 5270 Rosid View MSA
123737080 5271 Pentapetalae View MSA
122788816 5272 Eudicot View MSA
122046561 5273 Angiosperm View MSA
121310623 5274 Embryophyte View MSA
123348060 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.062        
cufflinks 5.835        
cufflinks 2.989       Low
cufflinks 6.377        
cufflinks 2.8       Low
cufflinks 6.167        

0 Strain