Gene : AtIPCS2 A. thaliana TAIR10
Primary Identifier:  ? AT2G37940 Defline:  (1 of 3) PTHR21290//PTHR21290:SF29 - SPHINGOMYELIN SYNTHETASE // SUBFAMILY NOT NAMED
Genomic Order:  3155 Name:  ? AT2G37940
Secondary Identifier:  ? PAC:19642116
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G37940 0.5kb upstream 0.5kb upstream 3406 true Chr2: 15876250-15879655 Arabidopsis thaliana
AT2G37940 0.5kb upstream 0.5kb upstream 500 false Chr2: 15876250-15876749 Arabidopsis thaliana
AT2G37940 0.5kb downstream 0.5kb downstream 3406 true Chr2: 15876750-15880155 Arabidopsis thaliana
AT2G37940 0.5kb downstream 0.5kb downstream 500 false Chr2: 15879656-15880155 Arabidopsis thaliana
AT2G37940 1.0kb upstream 1.0kb upstream 3906 true Chr2: 15875750-15879655 Arabidopsis thaliana
AT2G37940 1.0kb upstream 1.0kb upstream 1000 false Chr2: 15875750-15876749 Arabidopsis thaliana
AT2G37940 1.0kb downstream 1.0kb downstream 3906 true Chr2: 15876750-15880655 Arabidopsis thaliana
AT2G37940 1.0kb downstream 1.0kb downstream 1000 false Chr2: 15879656-15880655 Arabidopsis thaliana
AT2G37940 2.0kb upstream 2.0kb upstream 4906 true Chr2: 15874750-15879655 Arabidopsis thaliana
AT2G37940 2.0kb upstream 2.0kb upstream 2000 false Chr2: 15874750-15876749 Arabidopsis thaliana
AT2G37940 2.0kb downstream 2.0kb downstream 4906 true Chr2: 15876750-15881655 Arabidopsis thaliana
AT2G37940 2.0kb downstream 2.0kb downstream 2000 false Chr2: 15879656-15881655 Arabidopsis thaliana
AT2G37940 5.0kb upstream 5.0kb upstream 7906 true Chr2: 15871750-15879655 Arabidopsis thaliana
AT2G37940 5.0kb upstream 5.0kb upstream 5000 false Chr2: 15871750-15876749 Arabidopsis thaliana
AT2G37940 5.0kb downstream 5.0kb downstream 7906 true Chr2: 15876750-15884655 Arabidopsis thaliana
AT2G37940 5.0kb downstream 5.0kb downstream 5000 false Chr2: 15879656-15884655 Arabidopsis thaliana
AT2G37940 10.0kb upstream 10.0kb upstream 12906 true Chr2: 15866750-15879655 Arabidopsis thaliana
AT2G37940 10.0kb upstream 10.0kb upstream 10000 false Chr2: 15866750-15876749 Arabidopsis thaliana
AT2G37940 10.0kb downstream 10.0kb downstream 12906 true Chr2: 15876750-15889655 Arabidopsis thaliana
AT2G37940 10.0kb downstream 10.0kb downstream 10000 false Chr2: 15879656-15889655 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375004 5261 Brassicaceae View MSA
123838533 5264 Brassicales-Malvales View MSA
124344275 5266 SBM View MSA
124243094 5268 Malvidae View MSA
124064547 5270 Rosid View MSA
123744784 5271 Pentapetalae View MSA
122788943 5272 Eudicot View MSA
122046269 5273 Angiosperm View MSA
121346433 5274 Embryophyte View MSA
123427335 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.359     High High
cufflinks 35.82     High  
cufflinks 30.758     High  
cufflinks 30.214     High  
cufflinks 33.85     High  
cufflinks 31.346     High  

0 Strain