Gene : HOL2 A. thaliana TAIR10
Primary Identifier:  ? AT2G43920 Defline:  (1 of 3) 2.1.1.165 - Methyl halide transferase / Methyl chloride transferase
Genomic Order:  3802 Name:  ? AT2G43920
Secondary Identifier:  ? PAC:19642908
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6730 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G43920 0.5kb upstream 0.5kb upstream 2841 true Chr2: 18189008-18191848 Arabidopsis thaliana
AT2G43920 0.5kb upstream 0.5kb upstream 500 false Chr2: 18191349-18191848 Arabidopsis thaliana
AT2G43920 0.5kb downstream 0.5kb downstream 2841 true Chr2: 18188508-18191348 Arabidopsis thaliana
AT2G43920 0.5kb downstream 0.5kb downstream 500 false Chr2: 18188508-18189007 Arabidopsis thaliana
AT2G43920 1.0kb upstream 1.0kb upstream 3341 true Chr2: 18189008-18192348 Arabidopsis thaliana
AT2G43920 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18191349-18192348 Arabidopsis thaliana
AT2G43920 1.0kb downstream 1.0kb downstream 3341 true Chr2: 18188008-18191348 Arabidopsis thaliana
AT2G43920 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18188008-18189007 Arabidopsis thaliana
AT2G43920 2.0kb upstream 2.0kb upstream 4341 true Chr2: 18189008-18193348 Arabidopsis thaliana
AT2G43920 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18191349-18193348 Arabidopsis thaliana
AT2G43920 2.0kb downstream 2.0kb downstream 4341 true Chr2: 18187008-18191348 Arabidopsis thaliana
AT2G43920 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18187008-18189007 Arabidopsis thaliana
AT2G43920 5.0kb upstream 5.0kb upstream 7341 true Chr2: 18189008-18196348 Arabidopsis thaliana
AT2G43920 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18191349-18196348 Arabidopsis thaliana
AT2G43920 5.0kb downstream 5.0kb downstream 7341 true Chr2: 18184008-18191348 Arabidopsis thaliana
AT2G43920 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18184008-18189007 Arabidopsis thaliana
AT2G43920 10.0kb upstream 10.0kb upstream 12341 true Chr2: 18189008-18201348 Arabidopsis thaliana
AT2G43920 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18191349-18201348 Arabidopsis thaliana
AT2G43920 10.0kb downstream 10.0kb downstream 12341 true Chr2: 18179008-18191348 Arabidopsis thaliana
AT2G43920 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18179008-18189007 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040998 5273 Angiosperm View MSA
122379294 5261 Brassicaceae View MSA
123802194 5264 Brassicales-Malvales View MSA
124299408 5266 SBM View MSA
124249928 5268 Malvidae View MSA
124062480 5270 Rosid View MSA
123741516 5271 Pentapetalae View MSA
122787358 5272 Eudicot View MSA
121346954 5274 Embryophyte View MSA
123424412 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.564        
cufflinks 0.185     Low  
cufflinks 1.866       High
cufflinks 0.21     Low  
cufflinks 2.493       High
cufflinks 0.132     Low Low

0 Strain