Gene : SKL2 A. thaliana TAIR10
Primary Identifier:  ? AT2G35500 Defline:  (1 of 1) PTHR21087//PTHR21087:SF0 - SHIKIMATE KINASE // INACTIVE SHIKIMATE KINASE LIKE 2, CHLOROPLASTIC-RELATED
Genomic Order:  2888 Name:  ? AT2G35500
Secondary Identifier:  ? PAC:19638565
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G35500 0.5kb upstream 0.5kb upstream 2633 true Chr2: 14913503-14916135 Arabidopsis thaliana
AT2G35500 0.5kb upstream 0.5kb upstream 500 false Chr2: 14913503-14914002 Arabidopsis thaliana
AT2G35500 0.5kb downstream 0.5kb downstream 2633 true Chr2: 14914003-14916635 Arabidopsis thaliana
AT2G35500 0.5kb downstream 0.5kb downstream 500 false Chr2: 14916136-14916635 Arabidopsis thaliana
AT2G35500 1.0kb upstream 1.0kb upstream 3133 true Chr2: 14913003-14916135 Arabidopsis thaliana
AT2G35500 1.0kb upstream 1.0kb upstream 1000 false Chr2: 14913003-14914002 Arabidopsis thaliana
AT2G35500 1.0kb downstream 1.0kb downstream 3133 true Chr2: 14914003-14917135 Arabidopsis thaliana
AT2G35500 1.0kb downstream 1.0kb downstream 1000 false Chr2: 14916136-14917135 Arabidopsis thaliana
AT2G35500 2.0kb upstream 2.0kb upstream 4133 true Chr2: 14912003-14916135 Arabidopsis thaliana
AT2G35500 2.0kb upstream 2.0kb upstream 2000 false Chr2: 14912003-14914002 Arabidopsis thaliana
AT2G35500 2.0kb downstream 2.0kb downstream 4133 true Chr2: 14914003-14918135 Arabidopsis thaliana
AT2G35500 2.0kb downstream 2.0kb downstream 2000 false Chr2: 14916136-14918135 Arabidopsis thaliana
AT2G35500 5.0kb upstream 5.0kb upstream 7133 true Chr2: 14909003-14916135 Arabidopsis thaliana
AT2G35500 5.0kb upstream 5.0kb upstream 5000 false Chr2: 14909003-14914002 Arabidopsis thaliana
AT2G35500 5.0kb downstream 5.0kb downstream 7133 true Chr2: 14914003-14921135 Arabidopsis thaliana
AT2G35500 5.0kb downstream 5.0kb downstream 5000 false Chr2: 14916136-14921135 Arabidopsis thaliana
AT2G35500 10.0kb upstream 10.0kb upstream 12133 true Chr2: 14904003-14916135 Arabidopsis thaliana
AT2G35500 10.0kb upstream 10.0kb upstream 10000 false Chr2: 14904003-14914002 Arabidopsis thaliana
AT2G35500 10.0kb downstream 10.0kb downstream 12133 true Chr2: 14914003-14926135 Arabidopsis thaliana
AT2G35500 10.0kb downstream 10.0kb downstream 10000 false Chr2: 14916136-14926135 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367446 5261 Brassicaceae View MSA
123827628 5264 Brassicales-Malvales View MSA
124339752 5266 SBM View MSA
124237688 5268 Malvidae View MSA
124072915 5270 Rosid View MSA
123746382 5271 Pentapetalae View MSA
122790414 5272 Eudicot View MSA
122043641 5273 Angiosperm View MSA
121347570 5274 Embryophyte View MSA
123427676 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.615        
cufflinks 3.81        
cufflinks 26.282     High High
cufflinks 3.867        
cufflinks 18.899        
cufflinks 4.019        

0 Strain