Gene : AT2G33620 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31500:SF0 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  2690
Name:  ? AT2G33620 Secondary Identifier:  ? PAC:19639069
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G33620 0.5kb upstream 0.5kb upstream 3358 true Chr2: 14233526-14236883 Arabidopsis thaliana
AT2G33620 0.5kb upstream 0.5kb upstream 500 false Chr2: 14233526-14234025 Arabidopsis thaliana
AT2G33620 0.5kb downstream 0.5kb downstream 3358 true Chr2: 14234026-14237383 Arabidopsis thaliana
AT2G33620 0.5kb downstream 0.5kb downstream 500 false Chr2: 14236884-14237383 Arabidopsis thaliana
AT2G33620 1.0kb upstream 1.0kb upstream 3858 true Chr2: 14233026-14236883 Arabidopsis thaliana
AT2G33620 1.0kb upstream 1.0kb upstream 1000 false Chr2: 14233026-14234025 Arabidopsis thaliana
AT2G33620 1.0kb downstream 1.0kb downstream 3858 true Chr2: 14234026-14237883 Arabidopsis thaliana
AT2G33620 1.0kb downstream 1.0kb downstream 1000 false Chr2: 14236884-14237883 Arabidopsis thaliana
AT2G33620 2.0kb upstream 2.0kb upstream 4858 true Chr2: 14232026-14236883 Arabidopsis thaliana
AT2G33620 2.0kb upstream 2.0kb upstream 2000 false Chr2: 14232026-14234025 Arabidopsis thaliana
AT2G33620 2.0kb downstream 2.0kb downstream 4858 true Chr2: 14234026-14238883 Arabidopsis thaliana
AT2G33620 2.0kb downstream 2.0kb downstream 2000 false Chr2: 14236884-14238883 Arabidopsis thaliana
AT2G33620 5.0kb upstream 5.0kb upstream 7858 true Chr2: 14229026-14236883 Arabidopsis thaliana
AT2G33620 5.0kb upstream 5.0kb upstream 5000 false Chr2: 14229026-14234025 Arabidopsis thaliana
AT2G33620 5.0kb downstream 5.0kb downstream 7858 true Chr2: 14234026-14241883 Arabidopsis thaliana
AT2G33620 5.0kb downstream 5.0kb downstream 5000 false Chr2: 14236884-14241883 Arabidopsis thaliana
AT2G33620 10.0kb upstream 10.0kb upstream 12858 true Chr2: 14224026-14236883 Arabidopsis thaliana
AT2G33620 10.0kb upstream 10.0kb upstream 10000 false Chr2: 14224026-14234025 Arabidopsis thaliana
AT2G33620 10.0kb downstream 10.0kb downstream 12858 true Chr2: 14234026-14246883 Arabidopsis thaliana
AT2G33620 10.0kb downstream 10.0kb downstream 10000 false Chr2: 14236884-14246883 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377471 5261 Brassicaceae View MSA
123834471 5264 Brassicales-Malvales View MSA
124336935 5266 SBM View MSA
124238398 5268 Malvidae View MSA
124069070 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.193        
cufflinks 28.275        
cufflinks 1.999       Low
cufflinks 21.371        
cufflinks 2.002       Low
cufflinks 27.076        

0 Strain