Gene : SNF7.2 A. thaliana TAIR10
Primary Identifier:  ? AT2G19830 Defline:  (1 of 2) K12194 - charged multivesicular body protein 4 (CHMP4, SNF7, VPS32)
Genomic Order:  1222 Name:  ? AT2G19830
Secondary Identifier:  ? PAC:19638973
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0 Pathways

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G19830 0.5kb upstream 0.5kb upstream 2513 true Chr2: 8557729-8560241 Arabidopsis thaliana
AT2G19830 0.5kb upstream 0.5kb upstream 500 false Chr2: 8559742-8560241 Arabidopsis thaliana
AT2G19830 0.5kb downstream 0.5kb downstream 2513 true Chr2: 8557229-8559741 Arabidopsis thaliana
AT2G19830 0.5kb downstream 0.5kb downstream 500 false Chr2: 8557229-8557728 Arabidopsis thaliana
AT2G19830 1.0kb upstream 1.0kb upstream 3013 true Chr2: 8557729-8560741 Arabidopsis thaliana
AT2G19830 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8559742-8560741 Arabidopsis thaliana
AT2G19830 1.0kb downstream 1.0kb downstream 3013 true Chr2: 8556729-8559741 Arabidopsis thaliana
AT2G19830 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8556729-8557728 Arabidopsis thaliana
AT2G19830 2.0kb upstream 2.0kb upstream 4013 true Chr2: 8557729-8561741 Arabidopsis thaliana
AT2G19830 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8559742-8561741 Arabidopsis thaliana
AT2G19830 2.0kb downstream 2.0kb downstream 4013 true Chr2: 8555729-8559741 Arabidopsis thaliana
AT2G19830 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8555729-8557728 Arabidopsis thaliana
AT2G19830 5.0kb upstream 5.0kb upstream 7013 true Chr2: 8557729-8564741 Arabidopsis thaliana
AT2G19830 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8559742-8564741 Arabidopsis thaliana
AT2G19830 5.0kb downstream 5.0kb downstream 7013 true Chr2: 8552729-8559741 Arabidopsis thaliana
AT2G19830 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8552729-8557728 Arabidopsis thaliana
AT2G19830 10.0kb upstream 10.0kb upstream 12013 true Chr2: 8557729-8569741 Arabidopsis thaliana
AT2G19830 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8559742-8569741 Arabidopsis thaliana
AT2G19830 10.0kb downstream 10.0kb downstream 12013 true Chr2: 8547729-8559741 Arabidopsis thaliana
AT2G19830 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8547729-8557728 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376846 5261 Brassicaceae View MSA
123801372 5264 Brassicales-Malvales View MSA
124298684 5266 SBM View MSA
124150271 5268 Malvidae View MSA
123875918 5270 Rosid View MSA
123459668 5271 Pentapetalae View MSA
122495057 5272 Eudicot View MSA
122048548 5273 Angiosperm View MSA
121350329 5274 Embryophyte View MSA
123426511 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.317     High High
cufflinks 31.546     High Low
cufflinks 38.369     High  
cufflinks 33.629     High  
cufflinks 39.497     High  
cufflinks 32.194     High  

0 Strain