Gene : PAA2 A. thaliana TAIR10
Primary Identifier:  ? AT2G05840 Defline:  (1 of 2) K02730 - 20S proteasome subunit alpha 1 (PSMA6)
Genomic Order:  439 Name:  ? AT2G05840
Secondary Identifier:  ? PAC:19639196
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G05840 0.5kb upstream 0.5kb upstream 2703 true Chr2: 2233592-2236294 Arabidopsis thaliana
AT2G05840 0.5kb upstream 0.5kb upstream 500 false Chr2: 2233592-2234091 Arabidopsis thaliana
AT2G05840 0.5kb downstream 0.5kb downstream 2703 true Chr2: 2234092-2236794 Arabidopsis thaliana
AT2G05840 0.5kb downstream 0.5kb downstream 500 false Chr2: 2236295-2236794 Arabidopsis thaliana
AT2G05840 1.0kb upstream 1.0kb upstream 3203 true Chr2: 2233092-2236294 Arabidopsis thaliana
AT2G05840 1.0kb upstream 1.0kb upstream 1000 false Chr2: 2233092-2234091 Arabidopsis thaliana
AT2G05840 1.0kb downstream 1.0kb downstream 3203 true Chr2: 2234092-2237294 Arabidopsis thaliana
AT2G05840 1.0kb downstream 1.0kb downstream 1000 false Chr2: 2236295-2237294 Arabidopsis thaliana
AT2G05840 2.0kb upstream 2.0kb upstream 4203 true Chr2: 2232092-2236294 Arabidopsis thaliana
AT2G05840 2.0kb upstream 2.0kb upstream 2000 false Chr2: 2232092-2234091 Arabidopsis thaliana
AT2G05840 2.0kb downstream 2.0kb downstream 4203 true Chr2: 2234092-2238294 Arabidopsis thaliana
AT2G05840 2.0kb downstream 2.0kb downstream 2000 false Chr2: 2236295-2238294 Arabidopsis thaliana
AT2G05840 5.0kb upstream 5.0kb upstream 7203 true Chr2: 2229092-2236294 Arabidopsis thaliana
AT2G05840 5.0kb upstream 5.0kb upstream 5000 false Chr2: 2229092-2234091 Arabidopsis thaliana
AT2G05840 5.0kb downstream 5.0kb downstream 7203 true Chr2: 2234092-2241294 Arabidopsis thaliana
AT2G05840 5.0kb downstream 5.0kb downstream 5000 false Chr2: 2236295-2241294 Arabidopsis thaliana
AT2G05840 10.0kb upstream 10.0kb upstream 12203 true Chr2: 2224092-2236294 Arabidopsis thaliana
AT2G05840 10.0kb upstream 10.0kb upstream 10000 false Chr2: 2224092-2234091 Arabidopsis thaliana
AT2G05840 10.0kb downstream 10.0kb downstream 12203 true Chr2: 2234092-2246294 Arabidopsis thaliana
AT2G05840 10.0kb downstream 10.0kb downstream 10000 false Chr2: 2236295-2246294 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041382 5273 Angiosperm View MSA
122379560 5261 Brassicaceae View MSA
123833032 5264 Brassicales-Malvales View MSA
124344887 5266 SBM View MSA
124251564 5268 Malvidae View MSA
124061285 5270 Rosid View MSA
123742081 5271 Pentapetalae View MSA
122789367 5272 Eudicot View MSA
121345997 5274 Embryophyte View MSA
123424581 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.569       High
cufflinks 22.426        
cufflinks 18.112       Low
cufflinks 21.145        
cufflinks 20.437        
cufflinks 22.193        

0 Strain