Gene : AT2G04540 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11712//PTHR11712:SF275 - POLYKETIDE SYNTHASE-RELATED // 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE, MITOCHONDRIAL Genomic Order:  347
Name:  ? AT2G04540 Secondary Identifier:  ? PAC:19642690
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Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana FASYN-ELONG-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5156 Arabidopsis thaliana pathologic  
Athaliana PWY-5971 Arabidopsis thaliana pathologic  
Athaliana PWY-5989 Arabidopsis thaliana pathologic  
Athaliana PWY-6282 Arabidopsis thaliana pathologic  
Athaliana PWY-7388 Arabidopsis thaliana pathologic  
Athaliana PWY-7663 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G04540 0.5kb upstream 0.5kb upstream 3773 true Chr2: 1581416-1585188 Arabidopsis thaliana
AT2G04540 0.5kb upstream 0.5kb upstream 500 false Chr2: 1584689-1585188 Arabidopsis thaliana
AT2G04540 0.5kb downstream 0.5kb downstream 3773 true Chr2: 1580916-1584688 Arabidopsis thaliana
AT2G04540 0.5kb downstream 0.5kb downstream 500 false Chr2: 1580916-1581415 Arabidopsis thaliana
AT2G04540 1.0kb upstream 1.0kb upstream 4273 true Chr2: 1581416-1585688 Arabidopsis thaliana
AT2G04540 1.0kb upstream 1.0kb upstream 1000 false Chr2: 1584689-1585688 Arabidopsis thaliana
AT2G04540 1.0kb downstream 1.0kb downstream 4273 true Chr2: 1580416-1584688 Arabidopsis thaliana
AT2G04540 1.0kb downstream 1.0kb downstream 1000 false Chr2: 1580416-1581415 Arabidopsis thaliana
AT2G04540 2.0kb upstream 2.0kb upstream 5273 true Chr2: 1581416-1586688 Arabidopsis thaliana
AT2G04540 2.0kb upstream 2.0kb upstream 2000 false Chr2: 1584689-1586688 Arabidopsis thaliana
AT2G04540 2.0kb downstream 2.0kb downstream 5273 true Chr2: 1579416-1584688 Arabidopsis thaliana
AT2G04540 2.0kb downstream 2.0kb downstream 2000 false Chr2: 1579416-1581415 Arabidopsis thaliana
AT2G04540 5.0kb upstream 5.0kb upstream 8273 true Chr2: 1581416-1589688 Arabidopsis thaliana
AT2G04540 5.0kb upstream 5.0kb upstream 5000 false Chr2: 1584689-1589688 Arabidopsis thaliana
AT2G04540 5.0kb downstream 5.0kb downstream 8273 true Chr2: 1576416-1584688 Arabidopsis thaliana
AT2G04540 5.0kb downstream 5.0kb downstream 5000 false Chr2: 1576416-1581415 Arabidopsis thaliana
AT2G04540 10.0kb upstream 10.0kb upstream 13273 true Chr2: 1581416-1594688 Arabidopsis thaliana
AT2G04540 10.0kb upstream 10.0kb upstream 10000 false Chr2: 1584689-1594688 Arabidopsis thaliana
AT2G04540 10.0kb downstream 10.0kb downstream 13273 true Chr2: 1571416-1584688 Arabidopsis thaliana
AT2G04540 10.0kb downstream 10.0kb downstream 10000 false Chr2: 1571416-1581415 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371309 5261 Brassicaceae View MSA
123829991 5264 Brassicales-Malvales View MSA
124344955 5266 SBM View MSA
124240268 5268 Malvidae View MSA
124060523 5270 Rosid View MSA
123738041 5271 Pentapetalae View MSA
122786623 5272 Eudicot View MSA
122051170 5273 Angiosperm View MSA
121345587 5274 Embryophyte View MSA
123424058 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.094       Low
cufflinks 5.988        
cufflinks 6.183        
cufflinks 5.97        
cufflinks 5.941        
cufflinks 4.939       Low

0 Strain