Gene : AT2G03980 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22835//PTHR22835:SF116 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  292
Name:  ? AT2G03980 Secondary Identifier:  ? PAC:19638645
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana LIPAS-PWY Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G03980 0.5kb upstream 0.5kb upstream 3854 true Chr2: 1258699-1262552 Arabidopsis thaliana
AT2G03980 0.5kb upstream 0.5kb upstream 500 false Chr2: 1258699-1259198 Arabidopsis thaliana
AT2G03980 0.5kb downstream 0.5kb downstream 3854 true Chr2: 1259199-1263052 Arabidopsis thaliana
AT2G03980 0.5kb downstream 0.5kb downstream 500 false Chr2: 1262553-1263052 Arabidopsis thaliana
AT2G03980 1.0kb upstream 1.0kb upstream 4354 true Chr2: 1258199-1262552 Arabidopsis thaliana
AT2G03980 1.0kb upstream 1.0kb upstream 1000 false Chr2: 1258199-1259198 Arabidopsis thaliana
AT2G03980 1.0kb downstream 1.0kb downstream 4354 true Chr2: 1259199-1263552 Arabidopsis thaliana
AT2G03980 1.0kb downstream 1.0kb downstream 1000 false Chr2: 1262553-1263552 Arabidopsis thaliana
AT2G03980 2.0kb upstream 2.0kb upstream 5354 true Chr2: 1257199-1262552 Arabidopsis thaliana
AT2G03980 2.0kb upstream 2.0kb upstream 2000 false Chr2: 1257199-1259198 Arabidopsis thaliana
AT2G03980 2.0kb downstream 2.0kb downstream 5354 true Chr2: 1259199-1264552 Arabidopsis thaliana
AT2G03980 2.0kb downstream 2.0kb downstream 2000 false Chr2: 1262553-1264552 Arabidopsis thaliana
AT2G03980 5.0kb upstream 5.0kb upstream 8354 true Chr2: 1254199-1262552 Arabidopsis thaliana
AT2G03980 5.0kb upstream 5.0kb upstream 5000 false Chr2: 1254199-1259198 Arabidopsis thaliana
AT2G03980 5.0kb downstream 5.0kb downstream 8354 true Chr2: 1259199-1267552 Arabidopsis thaliana
AT2G03980 5.0kb downstream 5.0kb downstream 5000 false Chr2: 1262553-1267552 Arabidopsis thaliana
AT2G03980 10.0kb upstream 10.0kb upstream 13354 true Chr2: 1249199-1262552 Arabidopsis thaliana
AT2G03980 10.0kb upstream 10.0kb upstream 10000 false Chr2: 1249199-1259198 Arabidopsis thaliana
AT2G03980 10.0kb downstream 10.0kb downstream 13354 true Chr2: 1259199-1272552 Arabidopsis thaliana
AT2G03980 10.0kb downstream 10.0kb downstream 10000 false Chr2: 1262553-1272552 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365644 5261 Brassicaceae View MSA
123799004 5264 Brassicales-Malvales View MSA
124296572 5266 SBM View MSA
124148683 5268 Malvidae View MSA
124074404 5270 Rosid View MSA
123753785 5271 Pentapetalae View MSA
122797352 5272 Eudicot View MSA
122051674 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.348       High
cufflinks 4.283       Low
cufflinks 10.071        
cufflinks 4.592        
cufflinks 10.097        
cufflinks 5.005        

0 Strain