Gene : AT2G04040 A. thaliana TAIR10
Defline:  (1 of 14) PTHR11206:SF87 - MATE EFFLUX FAMILY PROTEIN-RELATED Genomic Order:  305
Name:  ? AT2G04040 Secondary Identifier:  ? PAC:19640609
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G04040 0.5kb upstream 0.5kb upstream 2478 true Chr2: 1334512-1336989 Arabidopsis thaliana
AT2G04040 0.5kb upstream 0.5kb upstream 500 false Chr2: 1336490-1336989 Arabidopsis thaliana
AT2G04040 0.5kb downstream 0.5kb downstream 2478 true Chr2: 1334012-1336489 Arabidopsis thaliana
AT2G04040 0.5kb downstream 0.5kb downstream 500 false Chr2: 1334012-1334511 Arabidopsis thaliana
AT2G04040 1.0kb upstream 1.0kb upstream 2978 true Chr2: 1334512-1337489 Arabidopsis thaliana
AT2G04040 1.0kb upstream 1.0kb upstream 1000 false Chr2: 1336490-1337489 Arabidopsis thaliana
AT2G04040 1.0kb downstream 1.0kb downstream 2978 true Chr2: 1333512-1336489 Arabidopsis thaliana
AT2G04040 1.0kb downstream 1.0kb downstream 1000 false Chr2: 1333512-1334511 Arabidopsis thaliana
AT2G04040 2.0kb upstream 2.0kb upstream 3978 true Chr2: 1334512-1338489 Arabidopsis thaliana
AT2G04040 2.0kb upstream 2.0kb upstream 2000 false Chr2: 1336490-1338489 Arabidopsis thaliana
AT2G04040 2.0kb downstream 2.0kb downstream 3978 true Chr2: 1332512-1336489 Arabidopsis thaliana
AT2G04040 2.0kb downstream 2.0kb downstream 2000 false Chr2: 1332512-1334511 Arabidopsis thaliana
AT2G04040 5.0kb upstream 5.0kb upstream 6978 true Chr2: 1334512-1341489 Arabidopsis thaliana
AT2G04040 5.0kb upstream 5.0kb upstream 5000 false Chr2: 1336490-1341489 Arabidopsis thaliana
AT2G04040 5.0kb downstream 5.0kb downstream 6978 true Chr2: 1329512-1336489 Arabidopsis thaliana
AT2G04040 5.0kb downstream 5.0kb downstream 5000 false Chr2: 1329512-1334511 Arabidopsis thaliana
AT2G04040 10.0kb upstream 10.0kb upstream 11978 true Chr2: 1334512-1346489 Arabidopsis thaliana
AT2G04040 10.0kb upstream 10.0kb upstream 10000 false Chr2: 1336490-1346489 Arabidopsis thaliana
AT2G04040 10.0kb downstream 10.0kb downstream 11978 true Chr2: 1324512-1336489 Arabidopsis thaliana
AT2G04040 10.0kb downstream 10.0kb downstream 10000 false Chr2: 1324512-1334511 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379492 5261 Brassicaceae View MSA
123838699 5264 Brassicales-Malvales View MSA
124346775 5266 SBM View MSA
124254486 5268 Malvidae View MSA
124070136 5270 Rosid View MSA
123747121 5271 Pentapetalae View MSA
122794225 5272 Eudicot View MSA
122042479 5273 Angiosperm View MSA
121350842 5274 Embryophyte View MSA
123428088 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.757        
cufflinks 0.115     Low Low
cufflinks 5.35       High
cufflinks 1.022        
cufflinks 7.174       High
cufflinks 0.073     Low Low

0 Strain