Gene : HCS1 A. thaliana TAIR10
Primary Identifier:  ? AT2G25710 Defline:  (1 of 2) 6.3.4.11 - Biotin--[methylcrotonoyl-CoA-carboxylase] ligase / Biotin--[methylcrotonoyl-CoA-carboxylase] synthetase
Genomic Order:  1848 Name:  ? AT2G25710
Secondary Identifier:  ? PAC:19643155
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY0-1264 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G25710 0.5kb upstream 0.5kb upstream 3317 true Chr2: 10952061-10955377 Arabidopsis thaliana
AT2G25710 0.5kb upstream 0.5kb upstream 500 false Chr2: 10952061-10952560 Arabidopsis thaliana
AT2G25710 0.5kb downstream 0.5kb downstream 3317 true Chr2: 10952561-10955877 Arabidopsis thaliana
AT2G25710 0.5kb downstream 0.5kb downstream 500 false Chr2: 10955378-10955877 Arabidopsis thaliana
AT2G25710 1.0kb upstream 1.0kb upstream 3817 true Chr2: 10951561-10955377 Arabidopsis thaliana
AT2G25710 1.0kb upstream 1.0kb upstream 1000 false Chr2: 10951561-10952560 Arabidopsis thaliana
AT2G25710 1.0kb downstream 1.0kb downstream 3817 true Chr2: 10952561-10956377 Arabidopsis thaliana
AT2G25710 1.0kb downstream 1.0kb downstream 1000 false Chr2: 10955378-10956377 Arabidopsis thaliana
AT2G25710 2.0kb upstream 2.0kb upstream 4817 true Chr2: 10950561-10955377 Arabidopsis thaliana
AT2G25710 2.0kb upstream 2.0kb upstream 2000 false Chr2: 10950561-10952560 Arabidopsis thaliana
AT2G25710 2.0kb downstream 2.0kb downstream 4817 true Chr2: 10952561-10957377 Arabidopsis thaliana
AT2G25710 2.0kb downstream 2.0kb downstream 2000 false Chr2: 10955378-10957377 Arabidopsis thaliana
AT2G25710 5.0kb upstream 5.0kb upstream 7817 true Chr2: 10947561-10955377 Arabidopsis thaliana
AT2G25710 5.0kb upstream 5.0kb upstream 5000 false Chr2: 10947561-10952560 Arabidopsis thaliana
AT2G25710 5.0kb downstream 5.0kb downstream 7817 true Chr2: 10952561-10960377 Arabidopsis thaliana
AT2G25710 5.0kb downstream 5.0kb downstream 5000 false Chr2: 10955378-10960377 Arabidopsis thaliana
AT2G25710 10.0kb upstream 10.0kb upstream 12817 true Chr2: 10942561-10955377 Arabidopsis thaliana
AT2G25710 10.0kb upstream 10.0kb upstream 10000 false Chr2: 10942561-10952560 Arabidopsis thaliana
AT2G25710 10.0kb downstream 10.0kb downstream 12817 true Chr2: 10952561-10965377 Arabidopsis thaliana
AT2G25710 10.0kb downstream 10.0kb downstream 10000 false Chr2: 10955378-10965377 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378087 5261 Brassicaceae View MSA
123830667 5264 Brassicales-Malvales View MSA
124340831 5266 SBM View MSA
124239108 5268 Malvidae View MSA
124067160 5270 Rosid View MSA
123748341 5271 Pentapetalae View MSA
122792571 5272 Eudicot View MSA
122046885 5273 Angiosperm View MSA
121347515 5274 Embryophyte View MSA
123426714 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.552       Low
cufflinks 7.225       High
cufflinks 3.963        
cufflinks 6.794        
cufflinks 3.568       Low
cufflinks 6.673        

0 Strain