Gene : AGL17 A. thaliana TAIR10
Primary Identifier:  ? AT2G22630 Defline:  (1 of 2) PTHR11945//PTHR11945:SF144 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL17-RELATED
Genomic Order:  1522 Name:  ? AT2G22630
Secondary Identifier:  ? PAC:19642313
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G22630 0.5kb upstream 0.5kb upstream 4086 true Chr2: 9617872-9621957 Arabidopsis thaliana
AT2G22630 0.5kb upstream 0.5kb upstream 500 false Chr2: 9617872-9618371 Arabidopsis thaliana
AT2G22630 0.5kb downstream 0.5kb downstream 4086 true Chr2: 9618372-9622457 Arabidopsis thaliana
AT2G22630 0.5kb downstream 0.5kb downstream 500 false Chr2: 9621958-9622457 Arabidopsis thaliana
AT2G22630 1.0kb upstream 1.0kb upstream 4586 true Chr2: 9617372-9621957 Arabidopsis thaliana
AT2G22630 1.0kb upstream 1.0kb upstream 1000 false Chr2: 9617372-9618371 Arabidopsis thaliana
AT2G22630 1.0kb downstream 1.0kb downstream 4586 true Chr2: 9618372-9622957 Arabidopsis thaliana
AT2G22630 1.0kb downstream 1.0kb downstream 1000 false Chr2: 9621958-9622957 Arabidopsis thaliana
AT2G22630 2.0kb upstream 2.0kb upstream 5586 true Chr2: 9616372-9621957 Arabidopsis thaliana
AT2G22630 2.0kb upstream 2.0kb upstream 2000 false Chr2: 9616372-9618371 Arabidopsis thaliana
AT2G22630 2.0kb downstream 2.0kb downstream 5586 true Chr2: 9618372-9623957 Arabidopsis thaliana
AT2G22630 2.0kb downstream 2.0kb downstream 2000 false Chr2: 9621958-9623957 Arabidopsis thaliana
AT2G22630 5.0kb upstream 5.0kb upstream 8586 true Chr2: 9613372-9621957 Arabidopsis thaliana
AT2G22630 5.0kb upstream 5.0kb upstream 5000 false Chr2: 9613372-9618371 Arabidopsis thaliana
AT2G22630 5.0kb downstream 5.0kb downstream 8586 true Chr2: 9618372-9626957 Arabidopsis thaliana
AT2G22630 5.0kb downstream 5.0kb downstream 5000 false Chr2: 9621958-9626957 Arabidopsis thaliana
AT2G22630 10.0kb upstream 10.0kb upstream 13586 true Chr2: 9608372-9621957 Arabidopsis thaliana
AT2G22630 10.0kb upstream 10.0kb upstream 10000 false Chr2: 9608372-9618371 Arabidopsis thaliana
AT2G22630 10.0kb downstream 10.0kb downstream 13586 true Chr2: 9618372-9631957 Arabidopsis thaliana
AT2G22630 10.0kb downstream 10.0kb downstream 10000 false Chr2: 9621958-9631957 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378353 5261 Brassicaceae View MSA
123841544 5264 Brassicales-Malvales View MSA
124351591 5266 SBM View MSA
124253386 5268 Malvidae View MSA
124074630 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.053     Low  
cufflinks 0.674        
cufflinks 0.021     Low  
cufflinks 1.325       High
cufflinks 0.011     Low Low
cufflinks 1.185        

0 Strain