Gene : AT2G20420 A. thaliana TAIR10
Defline:  (1 of 1) K01900 - succinyl-CoA synthetase beta subunit (LSC2) Genomic Order:  1280
Name:  ? AT2G20420 Secondary Identifier:  ? PAC:19641422
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G20420 0.5kb upstream 0.5kb upstream 3168 true Chr2: 8804953-8808120 Arabidopsis thaliana
AT2G20420 0.5kb upstream 0.5kb upstream 500 false Chr2: 8804953-8805452 Arabidopsis thaliana
AT2G20420 0.5kb downstream 0.5kb downstream 3168 true Chr2: 8805453-8808620 Arabidopsis thaliana
AT2G20420 0.5kb downstream 0.5kb downstream 500 false Chr2: 8808121-8808620 Arabidopsis thaliana
AT2G20420 1.0kb upstream 1.0kb upstream 3668 true Chr2: 8804453-8808120 Arabidopsis thaliana
AT2G20420 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8804453-8805452 Arabidopsis thaliana
AT2G20420 1.0kb downstream 1.0kb downstream 3668 true Chr2: 8805453-8809120 Arabidopsis thaliana
AT2G20420 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8808121-8809120 Arabidopsis thaliana
AT2G20420 2.0kb upstream 2.0kb upstream 4668 true Chr2: 8803453-8808120 Arabidopsis thaliana
AT2G20420 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8803453-8805452 Arabidopsis thaliana
AT2G20420 2.0kb downstream 2.0kb downstream 4668 true Chr2: 8805453-8810120 Arabidopsis thaliana
AT2G20420 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8808121-8810120 Arabidopsis thaliana
AT2G20420 5.0kb upstream 5.0kb upstream 7668 true Chr2: 8800453-8808120 Arabidopsis thaliana
AT2G20420 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8800453-8805452 Arabidopsis thaliana
AT2G20420 5.0kb downstream 5.0kb downstream 7668 true Chr2: 8805453-8813120 Arabidopsis thaliana
AT2G20420 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8808121-8813120 Arabidopsis thaliana
AT2G20420 10.0kb upstream 10.0kb upstream 12668 true Chr2: 8795453-8808120 Arabidopsis thaliana
AT2G20420 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8795453-8805452 Arabidopsis thaliana
AT2G20420 10.0kb downstream 10.0kb downstream 12668 true Chr2: 8805453-8818120 Arabidopsis thaliana
AT2G20420 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8808121-8818120 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368823 5261 Brassicaceae View MSA
123831519 5264 Brassicales-Malvales View MSA
124339342 5266 SBM View MSA
124251399 5268 Malvidae View MSA
124060872 5270 Rosid View MSA
123742087 5271 Pentapetalae View MSA
122792279 5272 Eudicot View MSA
122051444 5273 Angiosperm View MSA
121345383 5274 Embryophyte View MSA
123424499 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 75.486     High  
cufflinks 70.861     High  
cufflinks 67.603     High Low
cufflinks 75.153     High  
cufflinks 73.982     High  
cufflinks 81.948     High High

0 Strain