Gene : CDA1 A. thaliana TAIR10
Primary Identifier:  ? AT2G19570 Defline:  (1 of 1) K01489 - cytidine deaminase (cdd, CDA)
Genomic Order:  1195 Name:  ? AT2G19570
Secondary Identifier:  ? PAC:19641688
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Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6556 Arabidopsis thaliana pathologic  
Athaliana PWY-7193 Arabidopsis thaliana pathologic  
Athaliana PWY-7196 Arabidopsis thaliana pathologic  
Athaliana PWY-7199 Arabidopsis thaliana pathologic  
Athaliana PWY-7200 Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G19570 0.5kb upstream 0.5kb upstream 1771 true Chr2: 8470374-8472144 Arabidopsis thaliana
AT2G19570 0.5kb upstream 0.5kb upstream 500 false Chr2: 8471645-8472144 Arabidopsis thaliana
AT2G19570 0.5kb downstream 0.5kb downstream 1771 true Chr2: 8469874-8471644 Arabidopsis thaliana
AT2G19570 0.5kb downstream 0.5kb downstream 500 false Chr2: 8469874-8470373 Arabidopsis thaliana
AT2G19570 1.0kb upstream 1.0kb upstream 2271 true Chr2: 8470374-8472644 Arabidopsis thaliana
AT2G19570 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8471645-8472644 Arabidopsis thaliana
AT2G19570 1.0kb downstream 1.0kb downstream 2271 true Chr2: 8469374-8471644 Arabidopsis thaliana
AT2G19570 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8469374-8470373 Arabidopsis thaliana
AT2G19570 2.0kb upstream 2.0kb upstream 3271 true Chr2: 8470374-8473644 Arabidopsis thaliana
AT2G19570 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8471645-8473644 Arabidopsis thaliana
AT2G19570 2.0kb downstream 2.0kb downstream 3271 true Chr2: 8468374-8471644 Arabidopsis thaliana
AT2G19570 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8468374-8470373 Arabidopsis thaliana
AT2G19570 5.0kb upstream 5.0kb upstream 6271 true Chr2: 8470374-8476644 Arabidopsis thaliana
AT2G19570 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8471645-8476644 Arabidopsis thaliana
AT2G19570 5.0kb downstream 5.0kb downstream 6271 true Chr2: 8465374-8471644 Arabidopsis thaliana
AT2G19570 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8465374-8470373 Arabidopsis thaliana
AT2G19570 10.0kb upstream 10.0kb upstream 11271 true Chr2: 8470374-8481644 Arabidopsis thaliana
AT2G19570 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8471645-8481644 Arabidopsis thaliana
AT2G19570 10.0kb downstream 10.0kb downstream 11271 true Chr2: 8460374-8471644 Arabidopsis thaliana
AT2G19570 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8460374-8470373 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364002 5261 Brassicaceae View MSA
123839427 5264 Brassicales-Malvales View MSA
124337492 5266 SBM View MSA
124238889 5268 Malvidae View MSA
124068161 5270 Rosid View MSA
123744425 5271 Pentapetalae View MSA
122793352 5272 Eudicot View MSA
122048037 5273 Angiosperm View MSA
121343942 5274 Embryophyte View MSA
123424852 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.973        
cufflinks 18.931        
cufflinks 9.243       Low
cufflinks 38.636     High High
cufflinks 9.284       Low
cufflinks 30.426     High  

0 Strain