Gene : SCY1 A. thaliana TAIR10
Primary Identifier:  ? AT2G18710 Defline:  (1 of 1) PTHR10906//PTHR10906:SF9 - SECY/SEC61-ALPHA FAMILY MEMBER // PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC
Genomic Order:  1107 Name:  ? AT2G18710
Secondary Identifier:  ? PAC:19642273
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G18710 0.5kb upstream 0.5kb upstream 2902 true Chr2: 8112084-8114985 Arabidopsis thaliana
AT2G18710 0.5kb upstream 0.5kb upstream 500 false Chr2: 8114486-8114985 Arabidopsis thaliana
AT2G18710 0.5kb downstream 0.5kb downstream 2902 true Chr2: 8111584-8114485 Arabidopsis thaliana
AT2G18710 0.5kb downstream 0.5kb downstream 500 false Chr2: 8111584-8112083 Arabidopsis thaliana
AT2G18710 1.0kb upstream 1.0kb upstream 3402 true Chr2: 8112084-8115485 Arabidopsis thaliana
AT2G18710 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8114486-8115485 Arabidopsis thaliana
AT2G18710 1.0kb downstream 1.0kb downstream 3402 true Chr2: 8111084-8114485 Arabidopsis thaliana
AT2G18710 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8111084-8112083 Arabidopsis thaliana
AT2G18710 2.0kb upstream 2.0kb upstream 4402 true Chr2: 8112084-8116485 Arabidopsis thaliana
AT2G18710 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8114486-8116485 Arabidopsis thaliana
AT2G18710 2.0kb downstream 2.0kb downstream 4402 true Chr2: 8110084-8114485 Arabidopsis thaliana
AT2G18710 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8110084-8112083 Arabidopsis thaliana
AT2G18710 5.0kb upstream 5.0kb upstream 7402 true Chr2: 8112084-8119485 Arabidopsis thaliana
AT2G18710 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8114486-8119485 Arabidopsis thaliana
AT2G18710 5.0kb downstream 5.0kb downstream 7402 true Chr2: 8107084-8114485 Arabidopsis thaliana
AT2G18710 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8107084-8112083 Arabidopsis thaliana
AT2G18710 10.0kb upstream 10.0kb upstream 12402 true Chr2: 8112084-8124485 Arabidopsis thaliana
AT2G18710 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8114486-8124485 Arabidopsis thaliana
AT2G18710 10.0kb downstream 10.0kb downstream 12402 true Chr2: 8102084-8114485 Arabidopsis thaliana
AT2G18710 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8102084-8112083 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363653 5261 Brassicaceae View MSA
123829565 5264 Brassicales-Malvales View MSA
124340391 5266 SBM View MSA
124241538 5268 Malvidae View MSA
124063230 5270 Rosid View MSA
123738518 5271 Pentapetalae View MSA
122788956 5272 Eudicot View MSA
122046659 5273 Angiosperm View MSA
121346087 5274 Embryophyte View MSA
123425781 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.232     High  
cufflinks 14.979        
cufflinks 57.588     High  
cufflinks 15.759        
cufflinks 58.476     High  
cufflinks 10.143       Low

0 Strain