Gene : AT2G45980 A. thaliana TAIR10
Defline:  (1 of 2) PTHR34797:SF1 - EXPRESSED PROTEIN Genomic Order:  4017
Name:  ? AT2G45980 Secondary Identifier:  ? PAC:19638843
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G45980 0.5kb upstream 0.5kb upstream 2258 true Chr2: 18917352-18919609 Arabidopsis thaliana
AT2G45980 0.5kb upstream 0.5kb upstream 500 false Chr2: 18919110-18919609 Arabidopsis thaliana
AT2G45980 0.5kb downstream 0.5kb downstream 2258 true Chr2: 18916852-18919109 Arabidopsis thaliana
AT2G45980 0.5kb downstream 0.5kb downstream 500 false Chr2: 18916852-18917351 Arabidopsis thaliana
AT2G45980 1.0kb upstream 1.0kb upstream 2758 true Chr2: 18917352-18920109 Arabidopsis thaliana
AT2G45980 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18919110-18920109 Arabidopsis thaliana
AT2G45980 1.0kb downstream 1.0kb downstream 2758 true Chr2: 18916352-18919109 Arabidopsis thaliana
AT2G45980 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18916352-18917351 Arabidopsis thaliana
AT2G45980 2.0kb upstream 2.0kb upstream 3758 true Chr2: 18917352-18921109 Arabidopsis thaliana
AT2G45980 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18919110-18921109 Arabidopsis thaliana
AT2G45980 2.0kb downstream 2.0kb downstream 3758 true Chr2: 18915352-18919109 Arabidopsis thaliana
AT2G45980 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18915352-18917351 Arabidopsis thaliana
AT2G45980 5.0kb upstream 5.0kb upstream 6758 true Chr2: 18917352-18924109 Arabidopsis thaliana
AT2G45980 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18919110-18924109 Arabidopsis thaliana
AT2G45980 5.0kb downstream 5.0kb downstream 6758 true Chr2: 18912352-18919109 Arabidopsis thaliana
AT2G45980 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18912352-18917351 Arabidopsis thaliana
AT2G45980 10.0kb upstream 10.0kb upstream 11758 true Chr2: 18917352-18929109 Arabidopsis thaliana
AT2G45980 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18919110-18929109 Arabidopsis thaliana
AT2G45980 10.0kb downstream 10.0kb downstream 11758 true Chr2: 18907352-18919109 Arabidopsis thaliana
AT2G45980 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18907352-18917351 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041192 5273 Angiosperm View MSA
122363774 5261 Brassicaceae View MSA
123837297 5264 Brassicales-Malvales View MSA
124341426 5266 SBM View MSA
124251662 5268 Malvidae View MSA
124069169 5270 Rosid View MSA
123746892 5271 Pentapetalae View MSA
122786328 5272 Eudicot View MSA
121349557 5274 Embryophyte View MSA
123381356 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.088     High  
cufflinks 40.152     High  
cufflinks 35.126     High  
cufflinks 37.403     High  
cufflinks 46.607     High High
cufflinks 30.015     High Low

0 Strain