Gene : AT2G45100 A. thaliana TAIR10
Defline:  (1 of 3) K15196 - transcription factor IIIB 90 kDa subunit (BRF1, GTF3B) Genomic Order:  3925
Name:  ? AT2G45100 Secondary Identifier:  ? PAC:19638822
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G45100 0.5kb upstream 0.5kb upstream 3591 true Chr2: 18595348-18598938 Arabidopsis thaliana
AT2G45100 0.5kb upstream 0.5kb upstream 500 false Chr2: 18598439-18598938 Arabidopsis thaliana
AT2G45100 0.5kb downstream 0.5kb downstream 3591 true Chr2: 18594848-18598438 Arabidopsis thaliana
AT2G45100 0.5kb downstream 0.5kb downstream 500 false Chr2: 18594848-18595347 Arabidopsis thaliana
AT2G45100 1.0kb upstream 1.0kb upstream 4091 true Chr2: 18595348-18599438 Arabidopsis thaliana
AT2G45100 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18598439-18599438 Arabidopsis thaliana
AT2G45100 1.0kb downstream 1.0kb downstream 4091 true Chr2: 18594348-18598438 Arabidopsis thaliana
AT2G45100 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18594348-18595347 Arabidopsis thaliana
AT2G45100 2.0kb upstream 2.0kb upstream 5091 true Chr2: 18595348-18600438 Arabidopsis thaliana
AT2G45100 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18598439-18600438 Arabidopsis thaliana
AT2G45100 2.0kb downstream 2.0kb downstream 5091 true Chr2: 18593348-18598438 Arabidopsis thaliana
AT2G45100 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18593348-18595347 Arabidopsis thaliana
AT2G45100 5.0kb upstream 5.0kb upstream 8091 true Chr2: 18595348-18603438 Arabidopsis thaliana
AT2G45100 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18598439-18603438 Arabidopsis thaliana
AT2G45100 5.0kb downstream 5.0kb downstream 8091 true Chr2: 18590348-18598438 Arabidopsis thaliana
AT2G45100 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18590348-18595347 Arabidopsis thaliana
AT2G45100 10.0kb upstream 10.0kb upstream 13091 true Chr2: 18595348-18608438 Arabidopsis thaliana
AT2G45100 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18598439-18608438 Arabidopsis thaliana
AT2G45100 10.0kb downstream 10.0kb downstream 13091 true Chr2: 18585348-18598438 Arabidopsis thaliana
AT2G45100 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18585348-18595347 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121493715 5273 Angiosperm Singleton cluster - no MSA
122329158 5261 Brassicaceae Singleton cluster - no MSA
123770473 5264 Brassicales-Malvales Singleton cluster - no MSA
124269012 5266 SBM Singleton cluster - no MSA
124125176 5268 Malvidae Singleton cluster - no MSA
123854162 5270 Rosid Singleton cluster - no MSA
123440190 5271 Pentapetalae Singleton cluster - no MSA
122475780 5272 Eudicot Singleton cluster - no MSA
120767089 5274 Embryophyte Singleton cluster - no MSA
122809487 5275 Viridiplantae Singleton cluster - no MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.961        
cufflinks 5.458       High
cufflinks 1.889        
cufflinks 3.557        
cufflinks 1.526       Low
cufflinks 4.564        

0 Strain