Gene : AT2G43720 A. thaliana TAIR10
Defline:  (1 of 4) KOG3377 - Uncharacterized conserved protein Genomic Order:  3779
Name:  ? AT2G43720 Secondary Identifier:  ? PAC:19640776
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G43720 0.5kb upstream 0.5kb upstream 1572 true Chr2: 18122767-18124338 Arabidopsis thaliana
AT2G43720 0.5kb upstream 0.5kb upstream 500 false Chr2: 18122767-18123266 Arabidopsis thaliana
AT2G43720 0.5kb downstream 0.5kb downstream 1572 true Chr2: 18123267-18124838 Arabidopsis thaliana
AT2G43720 0.5kb downstream 0.5kb downstream 500 false Chr2: 18124339-18124838 Arabidopsis thaliana
AT2G43720 1.0kb upstream 1.0kb upstream 2072 true Chr2: 18122267-18124338 Arabidopsis thaliana
AT2G43720 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18122267-18123266 Arabidopsis thaliana
AT2G43720 1.0kb downstream 1.0kb downstream 2072 true Chr2: 18123267-18125338 Arabidopsis thaliana
AT2G43720 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18124339-18125338 Arabidopsis thaliana
AT2G43720 2.0kb upstream 2.0kb upstream 3072 true Chr2: 18121267-18124338 Arabidopsis thaliana
AT2G43720 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18121267-18123266 Arabidopsis thaliana
AT2G43720 2.0kb downstream 2.0kb downstream 3072 true Chr2: 18123267-18126338 Arabidopsis thaliana
AT2G43720 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18124339-18126338 Arabidopsis thaliana
AT2G43720 5.0kb upstream 5.0kb upstream 6072 true Chr2: 18118267-18124338 Arabidopsis thaliana
AT2G43720 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18118267-18123266 Arabidopsis thaliana
AT2G43720 5.0kb downstream 5.0kb downstream 6072 true Chr2: 18123267-18129338 Arabidopsis thaliana
AT2G43720 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18124339-18129338 Arabidopsis thaliana
AT2G43720 10.0kb upstream 10.0kb upstream 11072 true Chr2: 18113267-18124338 Arabidopsis thaliana
AT2G43720 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18113267-18123266 Arabidopsis thaliana
AT2G43720 10.0kb downstream 10.0kb downstream 11072 true Chr2: 18123267-18134338 Arabidopsis thaliana
AT2G43720 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18124339-18134338 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510536 5273 Angiosperm View MSA
122365185 5261 Brassicaceae View MSA
123798910 5264 Brassicales-Malvales View MSA
124296485 5266 SBM View MSA
124148621 5268 Malvidae View MSA
123874581 5270 Rosid View MSA
123458531 5271 Pentapetalae View MSA
122493936 5272 Eudicot View MSA
121351365 5274 Embryophyte View MSA
123425243 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.721       Low
cufflinks 9.319       High
cufflinks 3.765        
cufflinks 7.486        
cufflinks 3.297        
cufflinks 6.668        

0 Strain