Gene : MSS3 A. thaliana TAIR10
Primary Identifier:  ? AT2G43290 Defline:  (1 of 3) PTHR10891//PTHR10891:SF578 - EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN // CALMODULIN-LIKE PROTEIN 4-RELATED
Genomic Order:  3733 Name:  ? AT2G43290
Secondary Identifier:  ? PAC:19640328
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G43290 0.5kb upstream 0.5kb upstream 1496 true Chr2: 17991052-17992547 Arabidopsis thaliana
AT2G43290 0.5kb upstream 0.5kb upstream 500 false Chr2: 17992048-17992547 Arabidopsis thaliana
AT2G43290 0.5kb downstream 0.5kb downstream 1496 true Chr2: 17990552-17992047 Arabidopsis thaliana
AT2G43290 0.5kb downstream 0.5kb downstream 500 false Chr2: 17990552-17991051 Arabidopsis thaliana
AT2G43290 1.0kb upstream 1.0kb upstream 1996 true Chr2: 17991052-17993047 Arabidopsis thaliana
AT2G43290 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17992048-17993047 Arabidopsis thaliana
AT2G43290 1.0kb downstream 1.0kb downstream 1996 true Chr2: 17990052-17992047 Arabidopsis thaliana
AT2G43290 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17990052-17991051 Arabidopsis thaliana
AT2G43290 2.0kb upstream 2.0kb upstream 2996 true Chr2: 17991052-17994047 Arabidopsis thaliana
AT2G43290 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17992048-17994047 Arabidopsis thaliana
AT2G43290 2.0kb downstream 2.0kb downstream 2996 true Chr2: 17989052-17992047 Arabidopsis thaliana
AT2G43290 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17989052-17991051 Arabidopsis thaliana
AT2G43290 5.0kb upstream 5.0kb upstream 5996 true Chr2: 17991052-17997047 Arabidopsis thaliana
AT2G43290 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17992048-17997047 Arabidopsis thaliana
AT2G43290 5.0kb downstream 5.0kb downstream 5996 true Chr2: 17986052-17992047 Arabidopsis thaliana
AT2G43290 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17986052-17991051 Arabidopsis thaliana
AT2G43290 10.0kb upstream 10.0kb upstream 10996 true Chr2: 17991052-18002047 Arabidopsis thaliana
AT2G43290 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17992048-18002047 Arabidopsis thaliana
AT2G43290 10.0kb downstream 10.0kb downstream 10996 true Chr2: 17981052-17992047 Arabidopsis thaliana
AT2G43290 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17981052-17991051 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028011 5273 Angiosperm View MSA
122375938 5261 Brassicaceae View MSA
123839737 5264 Brassicales-Malvales View MSA
124345398 5266 SBM View MSA
124252586 5268 Malvidae View MSA
124071091 5270 Rosid View MSA
123752599 5271 Pentapetalae View MSA
122791242 5272 Eudicot View MSA
123429169 5275 Viridiplantae View MSA
121350734 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 69.441     High  
cufflinks 129.306     High  
cufflinks 37.652     High  
cufflinks 138.732     High  
cufflinks 20.303       Low
cufflinks 173.828     High High

0 Strain