Gene : AT2G43340 A. thaliana TAIR10
Defline:  (1 of 13) PF07939 - Protein of unknown function (DUF1685) (DUF1685) Genomic Order:  3737
Name:  ? AT2G43340 Secondary Identifier:  ? PAC:19640752
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G43340 0.5kb upstream 0.5kb upstream 1469 true Chr2: 18007197-18008665 Arabidopsis thaliana
AT2G43340 0.5kb upstream 0.5kb upstream 500 false Chr2: 18007197-18007696 Arabidopsis thaliana
AT2G43340 0.5kb downstream 0.5kb downstream 1469 true Chr2: 18007697-18009165 Arabidopsis thaliana
AT2G43340 0.5kb downstream 0.5kb downstream 500 false Chr2: 18008666-18009165 Arabidopsis thaliana
AT2G43340 1.0kb upstream 1.0kb upstream 1969 true Chr2: 18006697-18008665 Arabidopsis thaliana
AT2G43340 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18006697-18007696 Arabidopsis thaliana
AT2G43340 1.0kb downstream 1.0kb downstream 1969 true Chr2: 18007697-18009665 Arabidopsis thaliana
AT2G43340 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18008666-18009665 Arabidopsis thaliana
AT2G43340 2.0kb upstream 2.0kb upstream 2969 true Chr2: 18005697-18008665 Arabidopsis thaliana
AT2G43340 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18005697-18007696 Arabidopsis thaliana
AT2G43340 2.0kb downstream 2.0kb downstream 2969 true Chr2: 18007697-18010665 Arabidopsis thaliana
AT2G43340 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18008666-18010665 Arabidopsis thaliana
AT2G43340 5.0kb upstream 5.0kb upstream 5969 true Chr2: 18002697-18008665 Arabidopsis thaliana
AT2G43340 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18002697-18007696 Arabidopsis thaliana
AT2G43340 5.0kb downstream 5.0kb downstream 5969 true Chr2: 18007697-18013665 Arabidopsis thaliana
AT2G43340 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18008666-18013665 Arabidopsis thaliana
AT2G43340 10.0kb upstream 10.0kb upstream 10969 true Chr2: 17997697-18008665 Arabidopsis thaliana
AT2G43340 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17997697-18007696 Arabidopsis thaliana
AT2G43340 10.0kb downstream 10.0kb downstream 10969 true Chr2: 18007697-18018665 Arabidopsis thaliana
AT2G43340 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18008666-18018665 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381605 5261 Brassicaceae View MSA
123837386 5264 Brassicales-Malvales View MSA
124350178 5266 SBM View MSA
124242501 5268 Malvidae View MSA
124067258 5270 Rosid View MSA
123744509 5271 Pentapetalae View MSA
122793651 5272 Eudicot View MSA
122045124 5273 Angiosperm View MSA
121348379 5274 Embryophyte View MSA
123380837 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.404       High
cufflinks 9.751        
cufflinks 6.287        
cufflinks 13.763        
cufflinks 3.804       Low
cufflinks 14.149        

0 Strain