Gene : PDF1 A. thaliana TAIR10
Primary Identifier:  ? AT2G42840 Defline:  (1 of 1) PTHR33210:SF6 - PROTODERMAL FACTOR 1
Genomic Order:  3683 Name:  ? AT2G42840
Secondary Identifier:  ? PAC:19639913
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42840 0.5kb upstream 0.5kb upstream 1921 true Chr2: 17826116-17828036 Arabidopsis thaliana
AT2G42840 0.5kb upstream 0.5kb upstream 500 false Chr2: 17827537-17828036 Arabidopsis thaliana
AT2G42840 0.5kb downstream 0.5kb downstream 1921 true Chr2: 17825616-17827536 Arabidopsis thaliana
AT2G42840 0.5kb downstream 0.5kb downstream 500 false Chr2: 17825616-17826115 Arabidopsis thaliana
AT2G42840 1.0kb upstream 1.0kb upstream 2421 true Chr2: 17826116-17828536 Arabidopsis thaliana
AT2G42840 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17827537-17828536 Arabidopsis thaliana
AT2G42840 1.0kb downstream 1.0kb downstream 2421 true Chr2: 17825116-17827536 Arabidopsis thaliana
AT2G42840 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17825116-17826115 Arabidopsis thaliana
AT2G42840 2.0kb upstream 2.0kb upstream 3421 true Chr2: 17826116-17829536 Arabidopsis thaliana
AT2G42840 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17827537-17829536 Arabidopsis thaliana
AT2G42840 2.0kb downstream 2.0kb downstream 3421 true Chr2: 17824116-17827536 Arabidopsis thaliana
AT2G42840 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17824116-17826115 Arabidopsis thaliana
AT2G42840 5.0kb upstream 5.0kb upstream 6421 true Chr2: 17826116-17832536 Arabidopsis thaliana
AT2G42840 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17827537-17832536 Arabidopsis thaliana
AT2G42840 5.0kb downstream 5.0kb downstream 6421 true Chr2: 17821116-17827536 Arabidopsis thaliana
AT2G42840 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17821116-17826115 Arabidopsis thaliana
AT2G42840 10.0kb upstream 10.0kb upstream 11421 true Chr2: 17826116-17837536 Arabidopsis thaliana
AT2G42840 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17827537-17837536 Arabidopsis thaliana
AT2G42840 10.0kb downstream 10.0kb downstream 11421 true Chr2: 17816116-17827536 Arabidopsis thaliana
AT2G42840 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17816116-17826115 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380788 5261 Brassicaceae View MSA
123827488 5264 Brassicales-Malvales View MSA
124342509 5266 SBM View MSA
124240465 5268 Malvidae View MSA
124068625 5270 Rosid View MSA
123747098 5271 Pentapetalae View MSA
122793338 5272 Eudicot View MSA
122042133 5273 Angiosperm View MSA
121349082 5274 Embryophyte View MSA
123381156 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.02     High High
cufflinks 12.49        
cufflinks 26.174     High  
cufflinks 27.449        
cufflinks 27.627     High  
cufflinks 9.684       Low

0 Strain