Gene : HVA22F A. thaliana TAIR10
Primary Identifier:  ? AT2G42820 Defline:  (1 of 1) PTHR12300//PTHR12300:SF27 - HVA22-LIKE PROTEINS // HVA22-LIKE PROTEIN F
Genomic Order:  3681 Name:  ? AT2G42820
Secondary Identifier:  ? PAC:19641724
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42820 0.5kb upstream 0.5kb upstream 1708 true Chr2: 17817338-17819045 Arabidopsis thaliana
AT2G42820 0.5kb upstream 0.5kb upstream 500 false Chr2: 17818546-17819045 Arabidopsis thaliana
AT2G42820 0.5kb downstream 0.5kb downstream 1708 true Chr2: 17816838-17818545 Arabidopsis thaliana
AT2G42820 0.5kb downstream 0.5kb downstream 500 false Chr2: 17816838-17817337 Arabidopsis thaliana
AT2G42820 1.0kb upstream 1.0kb upstream 2208 true Chr2: 17817338-17819545 Arabidopsis thaliana
AT2G42820 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17818546-17819545 Arabidopsis thaliana
AT2G42820 1.0kb downstream 1.0kb downstream 2208 true Chr2: 17816338-17818545 Arabidopsis thaliana
AT2G42820 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17816338-17817337 Arabidopsis thaliana
AT2G42820 2.0kb upstream 2.0kb upstream 3208 true Chr2: 17817338-17820545 Arabidopsis thaliana
AT2G42820 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17818546-17820545 Arabidopsis thaliana
AT2G42820 2.0kb downstream 2.0kb downstream 3208 true Chr2: 17815338-17818545 Arabidopsis thaliana
AT2G42820 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17815338-17817337 Arabidopsis thaliana
AT2G42820 5.0kb upstream 5.0kb upstream 6208 true Chr2: 17817338-17823545 Arabidopsis thaliana
AT2G42820 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17818546-17823545 Arabidopsis thaliana
AT2G42820 5.0kb downstream 5.0kb downstream 6208 true Chr2: 17812338-17818545 Arabidopsis thaliana
AT2G42820 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17812338-17817337 Arabidopsis thaliana
AT2G42820 10.0kb upstream 10.0kb upstream 11208 true Chr2: 17817338-17828545 Arabidopsis thaliana
AT2G42820 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17818546-17828545 Arabidopsis thaliana
AT2G42820 10.0kb downstream 10.0kb downstream 11208 true Chr2: 17807338-17818545 Arabidopsis thaliana
AT2G42820 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17807338-17817337 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376142 5261 Brassicaceae View MSA
123840163 5264 Brassicales-Malvales View MSA
124343528 5266 SBM View MSA
124237128 5268 Malvidae View MSA
124064261 5270 Rosid View MSA
123742916 5271 Pentapetalae View MSA
122793296 5272 Eudicot View MSA
122047958 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.022        
cufflinks 6.059        
cufflinks 1.075        
cufflinks 5.855        
cufflinks 0.628       Low
cufflinks 4.559        

0 Strain