Gene : SPL9 A. thaliana TAIR10
Primary Identifier:  ? AT2G42200 Defline:  (1 of 17) PF03110 - SBP domain (SBP)
Genomic Order:  3620 Name:  ? AT2G42200
Secondary Identifier:  ? PAC:19642826
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42200 0.5kb upstream 0.5kb upstream 2724 true Chr2: 17586907-17589630 Arabidopsis thaliana
AT2G42200 0.5kb upstream 0.5kb upstream 500 false Chr2: 17586907-17587406 Arabidopsis thaliana
AT2G42200 0.5kb downstream 0.5kb downstream 2724 true Chr2: 17587407-17590130 Arabidopsis thaliana
AT2G42200 0.5kb downstream 0.5kb downstream 500 false Chr2: 17589631-17590130 Arabidopsis thaliana
AT2G42200 1.0kb upstream 1.0kb upstream 3224 true Chr2: 17586407-17589630 Arabidopsis thaliana
AT2G42200 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17586407-17587406 Arabidopsis thaliana
AT2G42200 1.0kb downstream 1.0kb downstream 3224 true Chr2: 17587407-17590630 Arabidopsis thaliana
AT2G42200 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17589631-17590630 Arabidopsis thaliana
AT2G42200 2.0kb upstream 2.0kb upstream 4224 true Chr2: 17585407-17589630 Arabidopsis thaliana
AT2G42200 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17585407-17587406 Arabidopsis thaliana
AT2G42200 2.0kb downstream 2.0kb downstream 4224 true Chr2: 17587407-17591630 Arabidopsis thaliana
AT2G42200 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17589631-17591630 Arabidopsis thaliana
AT2G42200 5.0kb upstream 5.0kb upstream 7224 true Chr2: 17582407-17589630 Arabidopsis thaliana
AT2G42200 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17582407-17587406 Arabidopsis thaliana
AT2G42200 5.0kb downstream 5.0kb downstream 7224 true Chr2: 17587407-17594630 Arabidopsis thaliana
AT2G42200 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17589631-17594630 Arabidopsis thaliana
AT2G42200 10.0kb upstream 10.0kb upstream 12224 true Chr2: 17577407-17589630 Arabidopsis thaliana
AT2G42200 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17577407-17587406 Arabidopsis thaliana
AT2G42200 10.0kb downstream 10.0kb downstream 12224 true Chr2: 17587407-17599630 Arabidopsis thaliana
AT2G42200 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17589631-17599630 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367772 5261 Brassicaceae View MSA
123835545 5264 Brassicales-Malvales View MSA
124350320 5266 SBM View MSA
124238491 5268 Malvidae View MSA
124062947 5270 Rosid View MSA
123736382 5271 Pentapetalae View MSA
122786018 5272 Eudicot View MSA
122041751 5273 Angiosperm View MSA
123428908 5275 Viridiplantae View MSA
121309885 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.566        
cufflinks 4.145       High
cufflinks 2.619       Low
cufflinks 2.714       Low
cufflinks 3.191        
cufflinks 3.828        

0 Strain