Gene : AT2G42170 A. thaliana TAIR10
Defline:  (1 of 4) PTHR11937//PTHR11937:SF247 - ACTIN // SUBFAMILY NOT NAMED Genomic Order:  3617
Name:  ? AT2G42170 Secondary Identifier:  ? PAC:19643499
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42170 0.5kb upstream 0.5kb upstream 3179 true Chr2: 17577214-17580392 Arabidopsis thaliana
AT2G42170 0.5kb upstream 0.5kb upstream 500 false Chr2: 17577214-17577713 Arabidopsis thaliana
AT2G42170 0.5kb downstream 0.5kb downstream 3179 true Chr2: 17577714-17580892 Arabidopsis thaliana
AT2G42170 0.5kb downstream 0.5kb downstream 500 false Chr2: 17580393-17580892 Arabidopsis thaliana
AT2G42170 1.0kb upstream 1.0kb upstream 3679 true Chr2: 17576714-17580392 Arabidopsis thaliana
AT2G42170 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17576714-17577713 Arabidopsis thaliana
AT2G42170 1.0kb downstream 1.0kb downstream 3679 true Chr2: 17577714-17581392 Arabidopsis thaliana
AT2G42170 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17580393-17581392 Arabidopsis thaliana
AT2G42170 2.0kb upstream 2.0kb upstream 4679 true Chr2: 17575714-17580392 Arabidopsis thaliana
AT2G42170 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17575714-17577713 Arabidopsis thaliana
AT2G42170 2.0kb downstream 2.0kb downstream 4679 true Chr2: 17577714-17582392 Arabidopsis thaliana
AT2G42170 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17580393-17582392 Arabidopsis thaliana
AT2G42170 5.0kb upstream 5.0kb upstream 7679 true Chr2: 17572714-17580392 Arabidopsis thaliana
AT2G42170 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17572714-17577713 Arabidopsis thaliana
AT2G42170 5.0kb downstream 5.0kb downstream 7679 true Chr2: 17577714-17585392 Arabidopsis thaliana
AT2G42170 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17580393-17585392 Arabidopsis thaliana
AT2G42170 10.0kb upstream 10.0kb upstream 12679 true Chr2: 17567714-17580392 Arabidopsis thaliana
AT2G42170 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17567714-17577713 Arabidopsis thaliana
AT2G42170 10.0kb downstream 10.0kb downstream 12679 true Chr2: 17577714-17590392 Arabidopsis thaliana
AT2G42170 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17580393-17590392 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122382267 5261 Brassicaceae View MSA
123841907 5264 Brassicales-Malvales View MSA
124348358 5266 SBM View MSA
124246415 5268 Malvidae View MSA
124071839 5270 Rosid View MSA
123628057 5271 Pentapetalae View MSA
122662368 5272 Eudicot View MSA
122050037 5273 Angiosperm View MSA
121311699 5274 Embryophyte View MSA
123348962 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.897        
cufflinks 0.119     Low  
cufflinks 2.369       High
cufflinks 0.081     Low Low
cufflinks 1.138        
cufflinks 0.139     Low  

0 Strain