Gene : AT2G42440 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31529:SF2 - LOB DOMAIN-CONTAINING PROTEIN 17-RELATED Genomic Order:  3644
Name:  ? AT2G42440 Secondary Identifier:  ? PAC:19638342
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42440 0.5kb upstream 0.5kb upstream 1617 true Chr2: 17668701-17670317 Arabidopsis thaliana
AT2G42440 0.5kb upstream 0.5kb upstream 500 false Chr2: 17669818-17670317 Arabidopsis thaliana
AT2G42440 0.5kb downstream 0.5kb downstream 1617 true Chr2: 17668201-17669817 Arabidopsis thaliana
AT2G42440 0.5kb downstream 0.5kb downstream 500 false Chr2: 17668201-17668700 Arabidopsis thaliana
AT2G42440 1.0kb upstream 1.0kb upstream 2117 true Chr2: 17668701-17670817 Arabidopsis thaliana
AT2G42440 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17669818-17670817 Arabidopsis thaliana
AT2G42440 1.0kb downstream 1.0kb downstream 2117 true Chr2: 17667701-17669817 Arabidopsis thaliana
AT2G42440 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17667701-17668700 Arabidopsis thaliana
AT2G42440 2.0kb upstream 2.0kb upstream 3117 true Chr2: 17668701-17671817 Arabidopsis thaliana
AT2G42440 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17669818-17671817 Arabidopsis thaliana
AT2G42440 2.0kb downstream 2.0kb downstream 3117 true Chr2: 17666701-17669817 Arabidopsis thaliana
AT2G42440 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17666701-17668700 Arabidopsis thaliana
AT2G42440 5.0kb upstream 5.0kb upstream 6117 true Chr2: 17668701-17674817 Arabidopsis thaliana
AT2G42440 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17669818-17674817 Arabidopsis thaliana
AT2G42440 5.0kb downstream 5.0kb downstream 6117 true Chr2: 17663701-17669817 Arabidopsis thaliana
AT2G42440 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17663701-17668700 Arabidopsis thaliana
AT2G42440 10.0kb upstream 10.0kb upstream 11117 true Chr2: 17668701-17679817 Arabidopsis thaliana
AT2G42440 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17669818-17679817 Arabidopsis thaliana
AT2G42440 10.0kb downstream 10.0kb downstream 11117 true Chr2: 17658701-17669817 Arabidopsis thaliana
AT2G42440 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17658701-17668700 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029797 5273 Angiosperm View MSA
122371932 5261 Brassicaceae View MSA
123800260 5264 Brassicales-Malvales View MSA
124297696 5266 SBM View MSA
124149520 5268 Malvidae View MSA
123875314 5270 Rosid View MSA
123741408 5271 Pentapetalae View MSA
122794456 5272 Eudicot View MSA
121351593 5274 Embryophyte View MSA
123382239 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.418        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.098       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.2     Low  

0 Strain