Gene : AT2G41130 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12565//PTHR12565:SF158 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BHLH106-RELATED Genomic Order:  3505
Name:  ? AT2G41130 Secondary Identifier:  ? PAC:19640041
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G41130 0.5kb upstream 0.5kb upstream 2156 true Chr2: 17142794-17144949 Arabidopsis thaliana
AT2G41130 0.5kb upstream 0.5kb upstream 500 false Chr2: 17142794-17143293 Arabidopsis thaliana
AT2G41130 0.5kb downstream 0.5kb downstream 2156 true Chr2: 17143294-17145449 Arabidopsis thaliana
AT2G41130 0.5kb downstream 0.5kb downstream 500 false Chr2: 17144950-17145449 Arabidopsis thaliana
AT2G41130 1.0kb upstream 1.0kb upstream 2656 true Chr2: 17142294-17144949 Arabidopsis thaliana
AT2G41130 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17142294-17143293 Arabidopsis thaliana
AT2G41130 1.0kb downstream 1.0kb downstream 2656 true Chr2: 17143294-17145949 Arabidopsis thaliana
AT2G41130 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17144950-17145949 Arabidopsis thaliana
AT2G41130 2.0kb upstream 2.0kb upstream 3656 true Chr2: 17141294-17144949 Arabidopsis thaliana
AT2G41130 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17141294-17143293 Arabidopsis thaliana
AT2G41130 2.0kb downstream 2.0kb downstream 3656 true Chr2: 17143294-17146949 Arabidopsis thaliana
AT2G41130 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17144950-17146949 Arabidopsis thaliana
AT2G41130 5.0kb upstream 5.0kb upstream 6656 true Chr2: 17138294-17144949 Arabidopsis thaliana
AT2G41130 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17138294-17143293 Arabidopsis thaliana
AT2G41130 5.0kb downstream 5.0kb downstream 6656 true Chr2: 17143294-17149949 Arabidopsis thaliana
AT2G41130 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17144950-17149949 Arabidopsis thaliana
AT2G41130 10.0kb upstream 10.0kb upstream 11656 true Chr2: 17133294-17144949 Arabidopsis thaliana
AT2G41130 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17133294-17143293 Arabidopsis thaliana
AT2G41130 10.0kb downstream 10.0kb downstream 11656 true Chr2: 17143294-17154949 Arabidopsis thaliana
AT2G41130 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17144950-17154949 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360906 5261 Brassicaceae View MSA
123828215 5264 Brassicales-Malvales View MSA
124351340 5266 SBM View MSA
124245665 5268 Malvidae View MSA
124070702 5270 Rosid View MSA
123748515 5271 Pentapetalae View MSA
122793981 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.077        
cufflinks 7.297        
cufflinks 1.097       Low
cufflinks 11.225       High
cufflinks 0.896       Low
cufflinks 10.569        

0 Strain