Gene : AT2G40620 A. thaliana TAIR10
Defline:  (1 of 61) PF00170 - bZIP transcription factor (bZIP_1) Genomic Order:  3446
Name:  ? AT2G40620 Secondary Identifier:  ? PAC:19642036
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G40620 0.5kb upstream 0.5kb upstream 2938 true Chr2: 16954541-16957478 Arabidopsis thaliana
AT2G40620 0.5kb upstream 0.5kb upstream 500 false Chr2: 16956979-16957478 Arabidopsis thaliana
AT2G40620 0.5kb downstream 0.5kb downstream 2938 true Chr2: 16954041-16956978 Arabidopsis thaliana
AT2G40620 0.5kb downstream 0.5kb downstream 500 false Chr2: 16954041-16954540 Arabidopsis thaliana
AT2G40620 1.0kb upstream 1.0kb upstream 3438 true Chr2: 16954541-16957978 Arabidopsis thaliana
AT2G40620 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16956979-16957978 Arabidopsis thaliana
AT2G40620 1.0kb downstream 1.0kb downstream 3438 true Chr2: 16953541-16956978 Arabidopsis thaliana
AT2G40620 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16953541-16954540 Arabidopsis thaliana
AT2G40620 2.0kb upstream 2.0kb upstream 4438 true Chr2: 16954541-16958978 Arabidopsis thaliana
AT2G40620 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16956979-16958978 Arabidopsis thaliana
AT2G40620 2.0kb downstream 2.0kb downstream 4438 true Chr2: 16952541-16956978 Arabidopsis thaliana
AT2G40620 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16952541-16954540 Arabidopsis thaliana
AT2G40620 5.0kb upstream 5.0kb upstream 7438 true Chr2: 16954541-16961978 Arabidopsis thaliana
AT2G40620 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16956979-16961978 Arabidopsis thaliana
AT2G40620 5.0kb downstream 5.0kb downstream 7438 true Chr2: 16949541-16956978 Arabidopsis thaliana
AT2G40620 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16949541-16954540 Arabidopsis thaliana
AT2G40620 10.0kb upstream 10.0kb upstream 12438 true Chr2: 16954541-16966978 Arabidopsis thaliana
AT2G40620 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16956979-16966978 Arabidopsis thaliana
AT2G40620 10.0kb downstream 10.0kb downstream 12438 true Chr2: 16944541-16956978 Arabidopsis thaliana
AT2G40620 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16944541-16954540 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363706 5261 Brassicaceae View MSA
123840975 5264 Brassicales-Malvales View MSA
124337734 5266 SBM View MSA
124243737 5268 Malvidae View MSA
124064643 5270 Rosid View MSA
123746615 5271 Pentapetalae View MSA
122797206 5272 Eudicot View MSA
122046720 5273 Angiosperm View MSA
123428913 5275 Viridiplantae View MSA
121310646 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.154        
cufflinks 3.62        
cufflinks 2.386        
cufflinks 7.282       High
cufflinks 2.19       Low
cufflinks 6.569       High

0 Strain