Gene : AT2G40316 A. thaliana TAIR10
Defline:  (1 of 1) PTHR15071 - CATION-DEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR Genomic Order:  3413
Name:  ? AT2G40316 Secondary Identifier:  ? PAC:19641558
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G40316 0.5kb upstream 0.5kb upstream 3480 true Chr2: 16835710-16839189 Arabidopsis thaliana
AT2G40316 0.5kb upstream 0.5kb upstream 500 false Chr2: 16835710-16836209 Arabidopsis thaliana
AT2G40316 0.5kb downstream 0.5kb downstream 3480 true Chr2: 16836210-16839689 Arabidopsis thaliana
AT2G40316 0.5kb downstream 0.5kb downstream 500 false Chr2: 16839190-16839689 Arabidopsis thaliana
AT2G40316 1.0kb upstream 1.0kb upstream 3980 true Chr2: 16835210-16839189 Arabidopsis thaliana
AT2G40316 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16835210-16836209 Arabidopsis thaliana
AT2G40316 1.0kb downstream 1.0kb downstream 3980 true Chr2: 16836210-16840189 Arabidopsis thaliana
AT2G40316 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16839190-16840189 Arabidopsis thaliana
AT2G40316 2.0kb upstream 2.0kb upstream 4980 true Chr2: 16834210-16839189 Arabidopsis thaliana
AT2G40316 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16834210-16836209 Arabidopsis thaliana
AT2G40316 2.0kb downstream 2.0kb downstream 4980 true Chr2: 16836210-16841189 Arabidopsis thaliana
AT2G40316 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16839190-16841189 Arabidopsis thaliana
AT2G40316 5.0kb upstream 5.0kb upstream 7980 true Chr2: 16831210-16839189 Arabidopsis thaliana
AT2G40316 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16831210-16836209 Arabidopsis thaliana
AT2G40316 5.0kb downstream 5.0kb downstream 7980 true Chr2: 16836210-16844189 Arabidopsis thaliana
AT2G40316 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16839190-16844189 Arabidopsis thaliana
AT2G40316 10.0kb upstream 10.0kb upstream 12980 true Chr2: 16826210-16839189 Arabidopsis thaliana
AT2G40316 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16826210-16836209 Arabidopsis thaliana
AT2G40316 10.0kb downstream 10.0kb downstream 12980 true Chr2: 16836210-16849189 Arabidopsis thaliana
AT2G40316 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16839190-16849189 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363687 5261 Brassicaceae View MSA
123841049 5264 Brassicales-Malvales View MSA
124343986 5266 SBM View MSA
124236930 5268 Malvidae View MSA
124061668 5270 Rosid View MSA
123744044 5271 Pentapetalae View MSA
122786177 5272 Eudicot View MSA
122046293 5273 Angiosperm View MSA
121344129 5274 Embryophyte View MSA
123379979 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.622        
cufflinks 3.796        
cufflinks 2.559        
cufflinks 3.763        
cufflinks 2.511       Low
cufflinks 3.783        

0 Strain