Gene : LAC5 A. thaliana TAIR10
Primary Identifier:  ? AT2G40370 Defline:  (1 of 2) PTHR11709:SF22 - LACCASE-12-RELATED
Genomic Order:  3419 Name:  ? AT2G40370
Secondary Identifier:  ? PAC:19640685
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5466 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G40370 0.5kb upstream 0.5kb upstream 2941 true Chr2: 16858166-16861106 Arabidopsis thaliana
AT2G40370 0.5kb upstream 0.5kb upstream 500 false Chr2: 16860607-16861106 Arabidopsis thaliana
AT2G40370 0.5kb downstream 0.5kb downstream 2941 true Chr2: 16857666-16860606 Arabidopsis thaliana
AT2G40370 0.5kb downstream 0.5kb downstream 500 false Chr2: 16857666-16858165 Arabidopsis thaliana
AT2G40370 1.0kb upstream 1.0kb upstream 3441 true Chr2: 16858166-16861606 Arabidopsis thaliana
AT2G40370 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16860607-16861606 Arabidopsis thaliana
AT2G40370 1.0kb downstream 1.0kb downstream 3441 true Chr2: 16857166-16860606 Arabidopsis thaliana
AT2G40370 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16857166-16858165 Arabidopsis thaliana
AT2G40370 2.0kb upstream 2.0kb upstream 4441 true Chr2: 16858166-16862606 Arabidopsis thaliana
AT2G40370 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16860607-16862606 Arabidopsis thaliana
AT2G40370 2.0kb downstream 2.0kb downstream 4441 true Chr2: 16856166-16860606 Arabidopsis thaliana
AT2G40370 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16856166-16858165 Arabidopsis thaliana
AT2G40370 5.0kb upstream 5.0kb upstream 7441 true Chr2: 16858166-16865606 Arabidopsis thaliana
AT2G40370 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16860607-16865606 Arabidopsis thaliana
AT2G40370 5.0kb downstream 5.0kb downstream 7441 true Chr2: 16853166-16860606 Arabidopsis thaliana
AT2G40370 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16853166-16858165 Arabidopsis thaliana
AT2G40370 10.0kb upstream 10.0kb upstream 12441 true Chr2: 16858166-16870606 Arabidopsis thaliana
AT2G40370 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16860607-16870606 Arabidopsis thaliana
AT2G40370 10.0kb downstream 10.0kb downstream 12441 true Chr2: 16848166-16860606 Arabidopsis thaliana
AT2G40370 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16848166-16858165 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361054 5261 Brassicaceae View MSA
123837056 5264 Brassicales-Malvales View MSA
124338843 5266 SBM View MSA
124253319 5268 Malvidae View MSA
124063263 5270 Rosid View MSA
123746086 5271 Pentapetalae View MSA
122788360 5272 Eudicot View MSA
122044394 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.085     Low  
cufflinks 7.045        
cufflinks 0.033     Low Low
cufflinks 12.88        
cufflinks 0.172     Low  
cufflinks 15.729       High

0 Strain