Gene : AT2G47560 A. thaliana TAIR10
Defline:  (1 of 5) PTHR14155//PTHR14155:SF117 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL41-RELATED Genomic Order:  4185
Name:  ? AT2G47560 Secondary Identifier:  ? PAC:19638165
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G47560 0.5kb upstream 0.5kb upstream 1512 true Chr2: 19511717-19513228 Arabidopsis thaliana
AT2G47560 0.5kb upstream 0.5kb upstream 500 false Chr2: 19512729-19513228 Arabidopsis thaliana
AT2G47560 0.5kb downstream 0.5kb downstream 1512 true Chr2: 19511217-19512728 Arabidopsis thaliana
AT2G47560 0.5kb downstream 0.5kb downstream 500 false Chr2: 19511217-19511716 Arabidopsis thaliana
AT2G47560 1.0kb upstream 1.0kb upstream 2012 true Chr2: 19511717-19513728 Arabidopsis thaliana
AT2G47560 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19512729-19513728 Arabidopsis thaliana
AT2G47560 1.0kb downstream 1.0kb downstream 2012 true Chr2: 19510717-19512728 Arabidopsis thaliana
AT2G47560 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19510717-19511716 Arabidopsis thaliana
AT2G47560 2.0kb upstream 2.0kb upstream 3012 true Chr2: 19511717-19514728 Arabidopsis thaliana
AT2G47560 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19512729-19514728 Arabidopsis thaliana
AT2G47560 2.0kb downstream 2.0kb downstream 3012 true Chr2: 19509717-19512728 Arabidopsis thaliana
AT2G47560 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19509717-19511716 Arabidopsis thaliana
AT2G47560 5.0kb upstream 5.0kb upstream 6012 true Chr2: 19511717-19517728 Arabidopsis thaliana
AT2G47560 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19512729-19517728 Arabidopsis thaliana
AT2G47560 5.0kb downstream 5.0kb downstream 6012 true Chr2: 19506717-19512728 Arabidopsis thaliana
AT2G47560 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19506717-19511716 Arabidopsis thaliana
AT2G47560 10.0kb upstream 10.0kb upstream 11012 true Chr2: 19511717-19522728 Arabidopsis thaliana
AT2G47560 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19512729-19522728 Arabidopsis thaliana
AT2G47560 10.0kb downstream 10.0kb downstream 11012 true Chr2: 19501717-19512728 Arabidopsis thaliana
AT2G47560 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19501717-19511716 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124349697 5266 SBM View MSA
122377224 5261 Brassicaceae View MSA
123839174 5264 Brassicales-Malvales View MSA
124253774 5268 Malvidae View MSA
124069328 5270 Rosid View MSA
123753111 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.201     Low Low
cufflinks 6.602        
cufflinks 0.654        
cufflinks 10.752       High
cufflinks 1.044        
cufflinks 5.476        

0 Strain