Gene : NGA1 A. thaliana TAIR10
Primary Identifier:  ? AT2G46870 Defline:  (1 of 92) PF02362 - B3 DNA binding domain (B3)
Genomic Order:  4115 Name:  ? AT2G46870
Secondary Identifier:  ? PAC:19641844
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G46870 0.5kb upstream 0.5kb upstream 1987 true Chr2: 19260418-19262404 Arabidopsis thaliana
AT2G46870 0.5kb upstream 0.5kb upstream 500 false Chr2: 19260418-19260917 Arabidopsis thaliana
AT2G46870 0.5kb downstream 0.5kb downstream 1987 true Chr2: 19260918-19262904 Arabidopsis thaliana
AT2G46870 0.5kb downstream 0.5kb downstream 500 false Chr2: 19262405-19262904 Arabidopsis thaliana
AT2G46870 1.0kb upstream 1.0kb upstream 2487 true Chr2: 19259918-19262404 Arabidopsis thaliana
AT2G46870 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19259918-19260917 Arabidopsis thaliana
AT2G46870 1.0kb downstream 1.0kb downstream 2487 true Chr2: 19260918-19263404 Arabidopsis thaliana
AT2G46870 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19262405-19263404 Arabidopsis thaliana
AT2G46870 2.0kb upstream 2.0kb upstream 3487 true Chr2: 19258918-19262404 Arabidopsis thaliana
AT2G46870 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19258918-19260917 Arabidopsis thaliana
AT2G46870 2.0kb downstream 2.0kb downstream 3487 true Chr2: 19260918-19264404 Arabidopsis thaliana
AT2G46870 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19262405-19264404 Arabidopsis thaliana
AT2G46870 5.0kb upstream 5.0kb upstream 6487 true Chr2: 19255918-19262404 Arabidopsis thaliana
AT2G46870 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19255918-19260917 Arabidopsis thaliana
AT2G46870 5.0kb downstream 5.0kb downstream 6487 true Chr2: 19260918-19267404 Arabidopsis thaliana
AT2G46870 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19262405-19267404 Arabidopsis thaliana
AT2G46870 10.0kb upstream 10.0kb upstream 11487 true Chr2: 19250918-19262404 Arabidopsis thaliana
AT2G46870 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19250918-19260917 Arabidopsis thaliana
AT2G46870 10.0kb downstream 10.0kb downstream 11487 true Chr2: 19260918-19272404 Arabidopsis thaliana
AT2G46870 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19262405-19272404 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373082 5261 Brassicaceae View MSA
123837410 5264 Brassicales-Malvales View MSA
124350382 5266 SBM View MSA
124246333 5268 Malvidae View MSA
124069436 5270 Rosid View MSA
123743929 5271 Pentapetalae View MSA
122797539 5272 Eudicot View MSA
122049835 5273 Angiosperm View MSA
121349423 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.684        
cufflinks 3.505        
cufflinks 21.728       High
cufflinks 4.508        
cufflinks 16.338        
cufflinks 1.785       Low

0 Strain