Gene : Bradi1g00730 B. distachyon v3.1
Defline:  (1 of 2) PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Genomic Order:  80
Name:  ? Bradi1g00730 Secondary Identifier:  ? PAC:32801427
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g00730 0.5kb upstream 0.5kb upstream 4938 true Bd1: 553123-558060 Brachypodium distachyon
Bradi1g00730 0.5kb upstream 0.5kb upstream 500 false Bd1: 553123-553622 Brachypodium distachyon
Bradi1g00730 0.5kb downstream 0.5kb downstream 4938 true Bd1: 553623-558560 Brachypodium distachyon
Bradi1g00730 0.5kb downstream 0.5kb downstream 500 false Bd1: 558061-558560 Brachypodium distachyon
Bradi1g00730 1.0kb upstream 1.0kb upstream 5438 true Bd1: 552623-558060 Brachypodium distachyon
Bradi1g00730 1.0kb upstream 1.0kb upstream 1000 false Bd1: 552623-553622 Brachypodium distachyon
Bradi1g00730 1.0kb downstream 1.0kb downstream 5438 true Bd1: 553623-559060 Brachypodium distachyon
Bradi1g00730 1.0kb downstream 1.0kb downstream 1000 false Bd1: 558061-559060 Brachypodium distachyon
Bradi1g00730 2.0kb upstream 2.0kb upstream 6438 true Bd1: 551623-558060 Brachypodium distachyon
Bradi1g00730 2.0kb upstream 2.0kb upstream 2000 false Bd1: 551623-553622 Brachypodium distachyon
Bradi1g00730 2.0kb downstream 2.0kb downstream 6438 true Bd1: 553623-560060 Brachypodium distachyon
Bradi1g00730 2.0kb downstream 2.0kb downstream 2000 false Bd1: 558061-560060 Brachypodium distachyon
Bradi1g00730 5.0kb upstream 5.0kb upstream 9438 true Bd1: 548623-558060 Brachypodium distachyon
Bradi1g00730 5.0kb upstream 5.0kb upstream 5000 false Bd1: 548623-553622 Brachypodium distachyon
Bradi1g00730 5.0kb downstream 5.0kb downstream 9438 true Bd1: 553623-563060 Brachypodium distachyon
Bradi1g00730 5.0kb downstream 5.0kb downstream 5000 false Bd1: 558061-563060 Brachypodium distachyon
Bradi1g00730 10.0kb upstream 10.0kb upstream 14438 true Bd1: 543623-558060 Brachypodium distachyon
Bradi1g00730 10.0kb upstream 10.0kb upstream 10000 false Bd1: 543623-553622 Brachypodium distachyon
Bradi1g00730 10.0kb downstream 10.0kb downstream 14438 true Bd1: 553623-568060 Brachypodium distachyon
Bradi1g00730 10.0kb downstream 10.0kb downstream 10000 false Bd1: 558061-568060 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575686 5269 Grass View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.077     High  
cufflinks 14.499     High  
cufflinks 15.178     High  
cufflinks 13.53     High  
cufflinks 12.409     High  
cufflinks 13.91     High  
cufflinks 12.611     High  
cufflinks 12.8     High  
cufflinks 13.402     High  
cufflinks 9.477        
cufflinks 4.587       Low
cufflinks 15.933     High  
cufflinks 5.323       Low
cufflinks 3.65       Low
cufflinks 8.765     High  
cufflinks 15.6     High  
cufflinks 16.469     High  
cufflinks 46.181     High High
cufflinks 17.206     High  
cufflinks 6.278       Low
cufflinks 20.027     High  
cufflinks 14.836     High  
cufflinks 14.197     High  
cufflinks 13.353     High  
cufflinks 13.225     High  
cufflinks 12.15     High  
cufflinks 4.721       Low
cufflinks 11.556     High  
cufflinks 12.564     High  
cufflinks 18.332     High  

0 Strain