Gene : Bradi1g03890 B. distachyon v3.1
Defline:  (1 of 1) K05752 - chromosome 3 open reading frame 10 (C3ORF10, HSPC300) Genomic Order:  482
Name:  ? Bradi1g03890 Secondary Identifier:  ? PAC:32801686
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g03890 0.5kb upstream 0.5kb upstream 3343 true Bd1: 2607941-2611283 Brachypodium distachyon
Bradi1g03890 0.5kb upstream 0.5kb upstream 500 false Bd1: 2607941-2608440 Brachypodium distachyon
Bradi1g03890 0.5kb downstream 0.5kb downstream 3343 true Bd1: 2608441-2611783 Brachypodium distachyon
Bradi1g03890 0.5kb downstream 0.5kb downstream 500 false Bd1: 2611284-2611783 Brachypodium distachyon
Bradi1g03890 1.0kb upstream 1.0kb upstream 3843 true Bd1: 2607441-2611283 Brachypodium distachyon
Bradi1g03890 1.0kb upstream 1.0kb upstream 1000 false Bd1: 2607441-2608440 Brachypodium distachyon
Bradi1g03890 1.0kb downstream 1.0kb downstream 3843 true Bd1: 2608441-2612283 Brachypodium distachyon
Bradi1g03890 1.0kb downstream 1.0kb downstream 1000 false Bd1: 2611284-2612283 Brachypodium distachyon
Bradi1g03890 2.0kb upstream 2.0kb upstream 4843 true Bd1: 2606441-2611283 Brachypodium distachyon
Bradi1g03890 2.0kb upstream 2.0kb upstream 2000 false Bd1: 2606441-2608440 Brachypodium distachyon
Bradi1g03890 2.0kb downstream 2.0kb downstream 4843 true Bd1: 2608441-2613283 Brachypodium distachyon
Bradi1g03890 2.0kb downstream 2.0kb downstream 2000 false Bd1: 2611284-2613283 Brachypodium distachyon
Bradi1g03890 5.0kb upstream 5.0kb upstream 7843 true Bd1: 2603441-2611283 Brachypodium distachyon
Bradi1g03890 5.0kb upstream 5.0kb upstream 5000 false Bd1: 2603441-2608440 Brachypodium distachyon
Bradi1g03890 5.0kb downstream 5.0kb downstream 7843 true Bd1: 2608441-2616283 Brachypodium distachyon
Bradi1g03890 5.0kb downstream 5.0kb downstream 5000 false Bd1: 2611284-2616283 Brachypodium distachyon
Bradi1g03890 10.0kb upstream 10.0kb upstream 12843 true Bd1: 2598441-2611283 Brachypodium distachyon
Bradi1g03890 10.0kb upstream 10.0kb upstream 10000 false Bd1: 2598441-2608440 Brachypodium distachyon
Bradi1g03890 10.0kb downstream 10.0kb downstream 12843 true Bd1: 2608441-2621283 Brachypodium distachyon
Bradi1g03890 10.0kb downstream 10.0kb downstream 10000 false Bd1: 2611284-2621283 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581070 5269 Grass View MSA
122047228 5273 Angiosperm View MSA
121347694 5274 Embryophyte View MSA
123380603 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.65        
cufflinks 3.956        
cufflinks 4.746        
cufflinks 5.833        
cufflinks 4.794        
cufflinks 3.754        
cufflinks 3.746        
cufflinks 4.054        
cufflinks 3.696        
cufflinks 4.898        
cufflinks 1.666       Low
cufflinks 3.846        
cufflinks 1.802       Low
cufflinks 1.898       Low
cufflinks 4.218        
cufflinks 3.256        
cufflinks 7.572       High
cufflinks 6.129        
cufflinks 7.329       High
cufflinks 1.46       Low
cufflinks 15.015     High High
cufflinks 3.6        
cufflinks 4.19        
cufflinks 4.493        
cufflinks 4.503        
cufflinks 5.504        
cufflinks 2.046       Low
cufflinks 4.986        
cufflinks 5.049        
cufflinks 9.354       High

0 Strain