Gene : Bradi1g04090 B. distachyon v3.1
Defline:  (1 of 1) PTHR33644:SF3 - U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED Genomic Order:  512
Name:  ? Bradi1g04090 Secondary Identifier:  ? PAC:32802082
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g04090 0.5kb upstream 0.5kb upstream 3913 true Bd1: 2777622-2781534 Brachypodium distachyon
Bradi1g04090 0.5kb upstream 0.5kb upstream 500 false Bd1: 2777622-2778121 Brachypodium distachyon
Bradi1g04090 0.5kb downstream 0.5kb downstream 3913 true Bd1: 2778122-2782034 Brachypodium distachyon
Bradi1g04090 0.5kb downstream 0.5kb downstream 500 false Bd1: 2781535-2782034 Brachypodium distachyon
Bradi1g04090 1.0kb upstream 1.0kb upstream 4413 true Bd1: 2777122-2781534 Brachypodium distachyon
Bradi1g04090 1.0kb upstream 1.0kb upstream 1000 false Bd1: 2777122-2778121 Brachypodium distachyon
Bradi1g04090 1.0kb downstream 1.0kb downstream 4413 true Bd1: 2778122-2782534 Brachypodium distachyon
Bradi1g04090 1.0kb downstream 1.0kb downstream 1000 false Bd1: 2781535-2782534 Brachypodium distachyon
Bradi1g04090 2.0kb upstream 2.0kb upstream 5413 true Bd1: 2776122-2781534 Brachypodium distachyon
Bradi1g04090 2.0kb upstream 2.0kb upstream 2000 false Bd1: 2776122-2778121 Brachypodium distachyon
Bradi1g04090 2.0kb downstream 2.0kb downstream 5413 true Bd1: 2778122-2783534 Brachypodium distachyon
Bradi1g04090 2.0kb downstream 2.0kb downstream 2000 false Bd1: 2781535-2783534 Brachypodium distachyon
Bradi1g04090 5.0kb upstream 5.0kb upstream 8413 true Bd1: 2773122-2781534 Brachypodium distachyon
Bradi1g04090 5.0kb upstream 5.0kb upstream 5000 false Bd1: 2773122-2778121 Brachypodium distachyon
Bradi1g04090 5.0kb downstream 5.0kb downstream 8413 true Bd1: 2778122-2786534 Brachypodium distachyon
Bradi1g04090 5.0kb downstream 5.0kb downstream 5000 false Bd1: 2781535-2786534 Brachypodium distachyon
Bradi1g04090 10.0kb upstream 10.0kb upstream 13413 true Bd1: 2768122-2781534 Brachypodium distachyon
Bradi1g04090 10.0kb upstream 10.0kb upstream 10000 false Bd1: 2768122-2778121 Brachypodium distachyon
Bradi1g04090 10.0kb downstream 10.0kb downstream 13413 true Bd1: 2778122-2791534 Brachypodium distachyon
Bradi1g04090 10.0kb downstream 10.0kb downstream 10000 false Bd1: 2781535-2791534 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574268 5269 Grass View MSA
122045751 5273 Angiosperm View MSA
121348831 5274 Embryophyte View MSA
123381033 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.358        
cufflinks 5.421        
cufflinks 5.625        
cufflinks 6.203        
cufflinks 13.572     High High
cufflinks 5.301        
cufflinks 5.641        
cufflinks 5.272        
cufflinks 5.472        
cufflinks 8.518       High
cufflinks 8.468       High
cufflinks 4.697        
cufflinks 5.411        
cufflinks 5.631        
cufflinks 4.554       Low
cufflinks 5.037        
cufflinks 5.82        
cufflinks 4.751        
cufflinks 9.809       High
cufflinks 7.288        
cufflinks 6.39        
cufflinks 6.21        
cufflinks 5.641        
cufflinks 5.609        
cufflinks 5.722        
cufflinks 8.474       High
cufflinks 6.528        
cufflinks 7.384        
cufflinks 6.474        
cufflinks 3.813       Low

0 Strain