Gene : Bradi1g04840 B. distachyon v3.1
Defline:  (1 of 1) PTHR14969:SF3 - DIHYDROSPHINGOSINE 1-PHOSPHATE PHOSPHATASE LCB3-RELATED Genomic Order:  607
Name:  ? Bradi1g04840 Secondary Identifier:  ? PAC:32793002
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRIGLSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g04840 0.5kb upstream 0.5kb upstream 3603 true Bd1: 3211820-3215422 Brachypodium distachyon
Bradi1g04840 0.5kb upstream 0.5kb upstream 500 false Bd1: 3211820-3212319 Brachypodium distachyon
Bradi1g04840 0.5kb downstream 0.5kb downstream 3603 true Bd1: 3212320-3215922 Brachypodium distachyon
Bradi1g04840 0.5kb downstream 0.5kb downstream 500 false Bd1: 3215423-3215922 Brachypodium distachyon
Bradi1g04840 1.0kb upstream 1.0kb upstream 4103 true Bd1: 3211320-3215422 Brachypodium distachyon
Bradi1g04840 1.0kb upstream 1.0kb upstream 1000 false Bd1: 3211320-3212319 Brachypodium distachyon
Bradi1g04840 1.0kb downstream 1.0kb downstream 4103 true Bd1: 3212320-3216422 Brachypodium distachyon
Bradi1g04840 1.0kb downstream 1.0kb downstream 1000 false Bd1: 3215423-3216422 Brachypodium distachyon
Bradi1g04840 2.0kb upstream 2.0kb upstream 5103 true Bd1: 3210320-3215422 Brachypodium distachyon
Bradi1g04840 2.0kb upstream 2.0kb upstream 2000 false Bd1: 3210320-3212319 Brachypodium distachyon
Bradi1g04840 2.0kb downstream 2.0kb downstream 5103 true Bd1: 3212320-3217422 Brachypodium distachyon
Bradi1g04840 2.0kb downstream 2.0kb downstream 2000 false Bd1: 3215423-3217422 Brachypodium distachyon
Bradi1g04840 5.0kb upstream 5.0kb upstream 8103 true Bd1: 3207320-3215422 Brachypodium distachyon
Bradi1g04840 5.0kb upstream 5.0kb upstream 5000 false Bd1: 3207320-3212319 Brachypodium distachyon
Bradi1g04840 5.0kb downstream 5.0kb downstream 8103 true Bd1: 3212320-3220422 Brachypodium distachyon
Bradi1g04840 5.0kb downstream 5.0kb downstream 5000 false Bd1: 3215423-3220422 Brachypodium distachyon
Bradi1g04840 10.0kb upstream 10.0kb upstream 13103 true Bd1: 3202320-3215422 Brachypodium distachyon
Bradi1g04840 10.0kb upstream 10.0kb upstream 10000 false Bd1: 3202320-3212319 Brachypodium distachyon
Bradi1g04840 10.0kb downstream 10.0kb downstream 13103 true Bd1: 3212320-3225422 Brachypodium distachyon
Bradi1g04840 10.0kb downstream 10.0kb downstream 10000 false Bd1: 3215423-3225422 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580296 5269 Grass View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.535        
cufflinks 3.815        
cufflinks 4.46        
cufflinks 3.187        
cufflinks 2.893        
cufflinks 4.083        
cufflinks 4.044        
cufflinks 3.425        
cufflinks 3.313        
cufflinks 2.682        
cufflinks 3.096        
cufflinks 4.534        
cufflinks 2.766        
cufflinks 2.084       Low
cufflinks 3.528        
cufflinks 4.455        
cufflinks 3.323        
cufflinks 9.402       High
cufflinks 9.164       High
cufflinks 3.175        
cufflinks 6.159       High
cufflinks 3.444        
cufflinks 2.606        
cufflinks 3.358        
cufflinks 3.027        
cufflinks 4.347        
cufflinks 2.764        
cufflinks 4.018        
cufflinks 3.948        
cufflinks 7.455       High

0 Strain